| Protein: | GAL11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1081 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAL11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1081] | [1..1081] |
|
|
2.0E-74 | [8..696] | [1790..2487] |
|
|
4.0E-67 | [3..696] | [1788..2490] |
|
|
4.0E-66 | [8..696] | [1585..2276] |
|
|
7.0E-65 | [4..694] | [715..1420] |
|
|
4.0E-56 | [7..500] | [142..626] |
|
Region A: Residues: [1-296] |
1 11 21 31 41 51
| | | | | |
1 MSAAPVQDKD TLSNAERAKN VNGLLQVLMD INTLNGGSSD TADKIRIHAK NFEAALFAKS 60
61 SSKKEYMDSM NEKVAVMRNT YNTRKNAVTA AAANNNIKPV EQHHINNLKN SGNSANNMNV 120
121 NMNLNPQMFL NQQAQARQQV AQQLRNQQQQ QQQQQQQQRR QLTPQQQQLV NQMKVAPIPK 180
181 QLLQRIPNIP PNINTWQQVT ALAQQKLLTP QDMEAAKEVY KIHQQLLFKA RLQQQQAQAQ 240
241 AQANNNNNGL PQNGNINNNI NIPQQQQMQP PNSSANNNPL QQQSSQNTVP NVLNQI
|
| Detection Method: |  |
| Confidence: | 4.39794 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [297-507] |
1 11 21 31 41 51
| | | | | |
1 NQIFSPEEQR SLLQEAIETC KNFEKTQLGS TMTEPVKQSF IRKYINQKAL RKIQALRDVK 60
61 NNNNANNNGS NLQRAQNVPM NIIQQQQQQN TNNNDTIATS ATPNAAAFSQ QQNASSKLYQ 120
121 MQQQQQAQAQ AQAQAQAQAQ AQAQAQAAQA AQAQAQAQAQ AQAQAQAQAQ AQAQAQAQAQ 180
181 AQAQAHAQHQ PSQQPQQAQQ QPNPLHGLTP T
|
| Detection Method: | |
| Confidence: | 14.49 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [508-601] |
1 11 21 31 41 51
| | | | | |
1 AKDVEVIKQL SLDASKTNLR LTDVTNSLSN EEKEKIKMKL KQGQKLFVQV SNFAPQVYII 60
61 TKNENFLKEV FQLRIFVKEI LEKCAEGIFV VKLD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.894 | 0.001 | transcription from RNA polymerase II promoter | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
|
Region A: Residues: [602-681] |
1 11 21 31 41 51
| | | | | |
1 TVDRLIIKYQ KYWESMRIQI LRRQAILRQQ QQMANNNGNP GTTSTGNNNN IATQQNMQQS 60
61 LQQMQHLQQL KMQQQQQQQQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [682-916] |
1 11 21 31 41 51
| | | | | |
1 QQQQQQQQQQ QQQQQHIYPS STPGVANYSA MANAPGNNIP YMNHKNTSSM DFLNSMENTP 60
61 KVPVSAAATP SLNKTINGKV NGRTKSNTIP VTSIPSTNKK LSISNAASQQ PTPRSASNTA 120
121 KSTPNTNPSP LKTQTKNGTP NPNNMKTVQS PMGAQPSYNS AIIENAFRKE ELLLKDLEIR 180
181 KLEISSRFKH RQEIFKDSPM DLFMSTLGDC LGIKDEEMLT SCTIPKAVVD HINGS
|
| Detection Method: | |
| Confidence: | 14.71 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [917-1081] |
1 11 21 31 41 51
| | | | | |
1 GKRKPTKAAQ RARDQDSIDI SIKDNKLVMK SKFNKSNRSY SIALSNVAAI FKGIGGNFKD 60
61 LSTLVHSSSP STSSNMDVGN PRKRKASVLE ISPQDSIASV LSPDSNIMSD SKKIKVDSPD 120
121 DPFMTKSGAT TSEKQEVTNE APFLTSGTSS EQFNVWDWNN WTSAT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
