| Protein: | GAL11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1081 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAL11.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1081] | [1..1081] |
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2.0E-74 | [8..696] | [1790..2487] |
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4.0E-67 | [3..696] | [1788..2490] |
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4.0E-66 | [8..696] | [1585..2276] |
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7.0E-65 | [4..694] | [715..1420] |
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4.0E-56 | [7..500] | [142..626] |
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Region A: Residues: [1-296] |
1 11 21 31 41 51
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1 MSAAPVQDKD TLSNAERAKN VNGLLQVLMD INTLNGGSSD TADKIRIHAK NFEAALFAKS 60
61 SSKKEYMDSM NEKVAVMRNT YNTRKNAVTA AAANNNIKPV EQHHINNLKN SGNSANNMNV 120
121 NMNLNPQMFL NQQAQARQQV AQQLRNQQQQ QQQQQQQQRR QLTPQQQQLV NQMKVAPIPK 180
181 QLLQRIPNIP PNINTWQQVT ALAQQKLLTP QDMEAAKEVY KIHQQLLFKA RLQQQQAQAQ 240
241 AQANNNNNGL PQNGNINNNI NIPQQQQMQP PNSSANNNPL QQQSSQNTVP NVLNQI
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| Detection Method: |  |
| Confidence: | 4.39794 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [297-507] |
1 11 21 31 41 51
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1 NQIFSPEEQR SLLQEAIETC KNFEKTQLGS TMTEPVKQSF IRKYINQKAL RKIQALRDVK 60
61 NNNNANNNGS NLQRAQNVPM NIIQQQQQQN TNNNDTIATS ATPNAAAFSQ QQNASSKLYQ 120
121 MQQQQQAQAQ AQAQAQAQAQ AQAQAQAAQA AQAQAQAQAQ AQAQAQAQAQ AQAQAQAQAQ 180
181 AQAQAHAQHQ PSQQPQQAQQ QPNPLHGLTP T
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| Detection Method: | |
| Confidence: | 14.49 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [508-601] |
1 11 21 31 41 51
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1 AKDVEVIKQL SLDASKTNLR LTDVTNSLSN EEKEKIKMKL KQGQKLFVQV SNFAPQVYII 60
61 TKNENFLKEV FQLRIFVKEI LEKCAEGIFV VKLD
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
|
Region A: Residues: [602-681] |
1 11 21 31 41 51
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1 TVDRLIIKYQ KYWESMRIQI LRRQAILRQQ QQMANNNGNP GTTSTGNNNN IATQQNMQQS 60
61 LQQMQHLQQL KMQQQQQQQQ
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.637 | 0.667 | transcription from RNA polymerase II promoter | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.691 | 0.002 | transcription from RNA polymerase II promoter | a.47.2 | t-snare proteins |
| View | Download | 0.621 | 0.002 | transcription from RNA polymerase II promoter | a.144.1 | PABC (PABP) domain |
| View | Download | 0.656 | 0.001 | transcription from RNA polymerase II promoter | a.2.7 | tRNA-binding arm |
| View | Download | 0.603 | 0.000 | transcription from RNA polymerase II promoter | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.595 | N/A | N/A | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.586 | N/A | N/A | a.156.1 | S13-like H2TH domain |
| View | Download | 0.567 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.545 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.530 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.527 | N/A | N/A | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.485 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.470 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.470 | N/A | N/A | c.15.1 | BRCT domain |
| View | Download | 0.441 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.436 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.400 | N/A | N/A | a.30.1 | ROP protein |
| View | Download | 0.389 | N/A | N/A | d.64.1 | eIF1-like |
| View | Download | 0.389 | N/A | N/A | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.381 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.366 | N/A | N/A | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.363 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.362 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.357 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.354 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.352 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.350 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.343 | N/A | N/A | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.339 | N/A | N/A | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.312 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.310 | N/A | N/A | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.299 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.289 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.288 | N/A | N/A | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.286 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.284 | N/A | N/A | a.2.5 | Prefoldin |
| View | Download | 0.278 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.274 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.267 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.265 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.258 | N/A | N/A | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.258 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.248 | N/A | N/A | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.232 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.228 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.223 | N/A | N/A | d.201.1 | SRP19 |
| View | Download | 0.221 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.218 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.218 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.217 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.214 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.209 | N/A | N/A | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
| View | Download | 0.209 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.207 | N/A | N/A | a.18.1 | T4 endonuclease V |
| View | Download | 0.207 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.205 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.205 | N/A | N/A | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.202 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.202 | N/A | N/A | a.64.1 | Saposin |
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Region A: Residues: [682-916] |
1 11 21 31 41 51
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1 QQQQQQQQQQ QQQQQHIYPS STPGVANYSA MANAPGNNIP YMNHKNTSSM DFLNSMENTP 60
61 KVPVSAAATP SLNKTINGKV NGRTKSNTIP VTSIPSTNKK LSISNAASQQ PTPRSASNTA 120
121 KSTPNTNPSP LKTQTKNGTP NPNNMKTVQS PMGAQPSYNS AIIENAFRKE ELLLKDLEIR 180
181 KLEISSRFKH RQEIFKDSPM DLFMSTLGDC LGIKDEEMLT SCTIPKAVVD HINGS
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| Detection Method: | |
| Confidence: | 14.71 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [917-1081] |
1 11 21 31 41 51
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1 GKRKPTKAAQ RARDQDSIDI SIKDNKLVMK SKFNKSNRSY SIALSNVAAI FKGIGGNFKD 60
61 LSTLVHSSSP STSSNMDVGN PRKRKASVLE ISPQDSIASV LSPDSNIMSD SKKIKVDSPD 120
121 DPFMTKSGAT TSEKQEVTNE APFLTSGTSS EQFNVWDWNN WTSAT
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
