YRC Public Data Repository - Protein Structure Prediction

Protein:	BIO5
Organism:	Saccharomyces cerevisiae
Length:	561 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIO5.

Description	E-value	Query Range	Subject Range
YI26_SCHPO - Uncharacterized amino-acid permease P7G5.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAP7G5.06 - amino acid permease, unknown 4	6.0E-72	[14..558]	[57..538]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	4.0E-67	[25..555]	[129..608]
gi\|68470470, gi\|... - gi\|68470731\|ref\|XP_720611.1\| N-acetylglucosamine-inducible general amino acid permease [Candida albi... gi\|18568390 - gi\|18568390\|gb\|AAL76065.1\| Gap1 protein [Candida albicans] gi\|238882678 - gi\|238882678\|gb\|EEQ46316.1\| general amino-acid permease GAP1 [Candida albicans WO-1]	6.0E-67	[18..555]	[48..527]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-66	[14..558]	[50..534]
INDA1_HYPAT - Amino-acid permease inda1 OS=Hypocrea atroviridis GN=inda1 PE=2 SV=1 INDA1_TRIHA, INA... - (P34054) Amino-acid permease inda1, (P34054) Amino-acid permease inda1	3.0E-64	[39..556]	[59..525]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRVGAVFLF VYERNFFLSI VPDRHRTEIR MSSSERSEVK FDKHFNWWSL LGIAFSLSCS  60
   61 WVGISASMAV GIASGGPLLI IYGLIIAAFF SLMCGISLGD FAAILPNSSG GSFWVLKMLE 120
  121 QESVTLKTPE YEDPSDDDEE VFLENYCQTF NVEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSKFQKVSSM VVGLLNYFGA IFTTASICSS LSMSCIGIHK LLHPDYELKH WHVFVGYECI  60
   61 NAVLTLFNIY STPLPYISQF GLYTSLLSFA MTFIICIVSR SDNTVDPWPK ASNIFGSFDN 120
  121 QTGWN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [280-561]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSGMAFVVGL VNPIWAFVGI DSATHMIDEV GYSKSRFLVP KVIITTIIVG FVTSFIYCVG  60
   61 LFFCITDQTA VVESILPIVE IFYQATGNRN LSVFLQCMCI TTGFVSGIAS GTWQSRILQS 120
  121 FGKSYAPFYK EGSLGNKSLK KLAVLTPGFK SPLYAHFLSQ ICVTIIGCIF MGSSTAFNAI 180
  181 ITACITLLLM SYAVPSFIFL FVIKKEKFIH RIESDVNCVS RPNRRRMSMI PHIICILWTL 240
  241 FCLVFLSFPY TLPVTAGNMN YTSVVYAVVF CIISIVVFPT CI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits