| Protein: | BIO5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 561 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIO5.
| Description | E-value | Query Range |
Subject Range |
|
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6.0E-72 | [14..558] | [57..538] |
|
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4.0E-67 | [25..555] | [129..608] |
|
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6.0E-67 | [18..555] | [48..527] |
|
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7.0E-66 | [14..558] | [50..534] |
|
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3.0E-64 | [39..556] | [59..525] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MNRVGAVFLF VYERNFFLSI VPDRHRTEIR MSSSERSEVK FDKHFNWWSL LGIAFSLSCS 60
61 WVGISASMAV GIASGGPLLI IYGLIIAAFF SLMCGISLGD FAAILPNSSG GSFWVLKMLE 120
121 QESVTLKTPE YEDPSDDDEE VFLENYCQTF NVEV
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [155-279] |
1 11 21 31 41 51
| | | | | |
1 SSKFQKVSSM VVGLLNYFGA IFTTASICSS LSMSCIGIHK LLHPDYELKH WHVFVGYECI 60
61 NAVLTLFNIY STPLPYISQF GLYTSLLSFA MTFIICIVSR SDNTVDPWPK ASNIFGSFDN 120
121 QTGWN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.710 | a.1.1 | Globin-like |
| View | Download | 0.732 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.668 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.653 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.689 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.618 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.616 | a.46.1 | Methionine synthase domain |
| View | Download | 0.603 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.572 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.564 | a.74.1 | Cyclin-like |
| View | Download | 0.548 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.547 | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.542 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.524 | a.29.2 | Bromodomain |
| View | Download | 0.523 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.518 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.504 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.488 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.486 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.480 | a.1.1 | Globin-like |
| View | Download | 0.474 | a.74.1 | Cyclin-like |
| View | Download | 0.473 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.467 | d.6.1 | Prion-like |
| View | Download | 0.462 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.457 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.456 | a.26.1 | 4-helical cytokines |
| View | Download | 0.451 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.450 | a.118.8 | TPR-like |
| View | Download | 0.442 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.440 | a.63.1 | Apolipophorin-III |
| View | Download | 0.439 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.436 | a.24.3 | Cytochromes |
| View | Download | 0.435 | a.26.1 | 4-helical cytokines |
| View | Download | 0.433 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.430 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.427 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.418 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.417 | a.19.1 | Fertilization protein |
| View | Download | 0.417 | a.118.1 | ARM repeat |
| View | Download | 0.411 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.411 | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.385 | a.1.1 | Globin-like |
| View | Download | 0.383 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.380 | a.47.2 | t-snare proteins |
| View | Download | 0.377 | a.7.8 | GAT domain |
| View | Download | 0.377 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.369 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.364 | d.58.29 | Adenylyl and guanylyl cyclase catalytic domain |
| View | Download | 0.363 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.362 | a.7.1 | Spectrin repeat |
| View | Download | 0.362 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.361 | a.24.4 | Hemerythrin |
| View | Download | 0.360 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.360 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.358 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.355 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.354 | d.92.1 | Metalloproteases ("zincins"), catalytic domain |
| View | Download | 0.353 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.349 | a.47.2 | t-snare proteins |
| View | Download | 0.345 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.344 | a.7.1 | Spectrin repeat |
| View | Download | 0.341 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.341 | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.338 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.334 | a.47.1 | STAT |
| View | Download | 0.333 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.332 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.332 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.331 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.329 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.328 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.328 | a.77.1 | DEATH domain |
| View | Download | 0.327 | a.25.1 | Ferritin-like |
| View | Download | 0.322 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.320 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.319 | a.1.1 | Globin-like |
| View | Download | 0.318 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.309 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.306 | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.304 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.304 | a.63.1 | Apolipophorin-III |
| View | Download | 0.303 | a.118.8 | TPR-like |
| View | Download | 0.303 | d.6.1 | Prion-like |
| View | Download | 0.302 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.301 | d.75.2 | DNA repair protein MutS, domain I |
| View | Download | 0.297 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.295 | a.118.1 | ARM repeat |
| View | Download | 0.294 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
| View | Download | 0.292 | a.74.1 | Cyclin-like |
| View | Download | 0.288 | g.44.1 | RING/U-box |
| View | Download | 0.281 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.276 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.273 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.272 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.271 | a.126.1 | Serum albumin-like |
| View | Download | 0.270 | a.3.1 | Cytochrome c |
| View | Download | 0.268 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.266 | a.54.1 | Domain of early E2A DNA-binding protein, ADDBP |
| View | Download | 0.265 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.264 | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.264 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.260 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.260 | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.256 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.254 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.250 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.248 | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.248 | a.7.7 | BAG domain |
| View | Download | 0.248 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.242 | a.7.4 | Smac/diablo |
| View | Download | 0.242 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.240 | a.126.1 | Serum albumin-like |
| View | Download | 0.239 | a.77.1 | DEATH domain |
| View | Download | 0.234 | a.47.2 | t-snare proteins |
| View | Download | 0.233 | a.26.1 | 4-helical cytokines |
| View | Download | 0.231 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.223 | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.221 | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.220 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.213 | b.88.1 | Mss4-like |
| View | Download | 0.209 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.209 | a.48.2 | Transferrin receptor ectodomain, C-terminal domain |
| View | Download | 0.207 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.206 | a.74.1 | Cyclin-like |
| View | Download | 0.203 | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
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Region A: Residues: [280-561] |
1 11 21 31 41 51
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1 SSGMAFVVGL VNPIWAFVGI DSATHMIDEV GYSKSRFLVP KVIITTIIVG FVTSFIYCVG 60
61 LFFCITDQTA VVESILPIVE IFYQATGNRN LSVFLQCMCI TTGFVSGIAS GTWQSRILQS 120
121 FGKSYAPFYK EGSLGNKSLK KLAVLTPGFK SPLYAHFLSQ ICVTIIGCIF MGSSTAFNAI 180
181 ITACITLLLM SYAVPSFIFL FVIKKEKFIH RIESDVNCVS RPNRRRMSMI PHIICILWTL 240
241 FCLVFLSFPY TLPVTAGNMN YTSVVYAVVF CIISIVVFPT CI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
