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View Structure Prediction Details

Protein: NOG2
Organism: Saccharomyces cerevisiae
Length: 486 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOG2.

Description E-value Query
Range
Subject
Range
NOG2_YEAST - Nucleolar GTP-binding protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOG2 PE=...
NOG2 - Putative GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for...
0.0 [1..467] [1..467]
NOG2_SCHPO - Nucleolar GTP-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nog2 PE=1 ...
SPAC6F6.03c - ribosome export GTPase
0.0 [1..468] [1..463]
NOG2_MOUSE - Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=1
2.0E-95 [26..478] [29..472]
GNL2 - guanine nucleotide binding protein-like 2 (nucleolar)
8.0E-94 [26..472] [29..466]
NOG2_PNECA - Nucleolar GTP-binding protein 2 OS=Pneumocystis carinii GN=NOG2 PE=2 SV=1
6.0E-93 [18..468] [7..446]
NUG2_ARATH - Nuclear/nucleolar GTPase 2 OS=Arabidopsis thaliana GN=NUG2 PE=1 SV=1
2.0E-84 [31..472] [33..465]
gi|85014445, gi|... - gi|85014445|ref|XP_955718.1| GTP-binding protein [Encephalitozoon cuniculi GB-M1], gi|19171412|emb|C...
gi|19173286 - ref|NP_597089.1| similarity to HYPOTHETICAL GTP-BINDING PROTEIN YN8U_yeast [Encephalitozoon cuniculi...
2.0E-76 [27..474] [10..417]
DER_CLOPE, ENGA_... - GTP-binding protein engA OS=Clostridium perfringens GN=engA PE=3 SV=1, GTPase Der OS=Clostridium per...
DER_CLOP1 - GTPase Der OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 82...
DER_CLOPS - GTPase Der OS=Clostridium perfringens (strain SM101 / Type A) GN=der PE=3 SV=1
gi|168217042, gi... - gi|182380862|gb|EDT78341.1| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239], gi...
DER_CLOPE - GTPase Der OS=Clostridium perfringens (strain 13 / Type A) GN=der PE=3 SV=1
gi|169299237, gi... - gi|169342731|ref|ZP_02863772.1| putative GTP-binding protein Era [Clostridium perfringens C str. JGS...
gi|177908885, gi... - gi|182625851|ref|ZP_02953617.1| putative GTP-binding protein Era [Clostridium perfringens D str. JGS...
gi|170661368, gi... - gi|170661368|gb|EDT14051.1| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987...
gi|170711316, gi... - gi|170711316|gb|EDT23498.1| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 36...
gi|170714259, gi... - gi|170714259|gb|EDT26441.1| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969...
4.0E-64 [144..458] [6..341]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTGKKEKSR RIREGDTKDG NLRVKGENFY RDSKRVKFLN MYTSGKEIRN KKGNLIRAAS  60
   61 FQDSTIPDAR VQPDRRWFGN TRVISQDALQ HFRSALGETQ KDTYQVLLRR NK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPMSLLEEKD ADESPKARIL DTESYADAFG PKAQRKRPRL AASNLEDLVK ATNEDITKYE  60
   61 EKQVLDATLG LMGNQEDKEN GWTSAAKEAI FSKGQSKRIW NELYKVIDSS DVVIHVLDAR 120
  121 DPLGTRCKSV EEYMKKETPH KHLIYVLNKC DLVPTWVAAA WVKHLSKERP TLAFHASITN 180
  181 SFGKGSLIQL LRQFSQLHTD 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.522879
Match: 1jah__
Description: cH-p21 Ras protein
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [313-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKQISVGFIG YPNTGKSSII NTLRKKKVCQ VAPIPGETKV WQYITLMKRI FLIDCPGIVP  60
   61 PSSKDSEEDI LFRGVVRVEH VTHPEQYIPG VLKRCQVKHL ERTYEISGWK DATEFIEILA 120
  121 RKQGRLLKGG EPDESGVSKQ ILNDFNRGKI PWFVLPPEKE GEEKPKKKEV EKTA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.0
Match: 1egaA_
Description: GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle