YRC Public Data Repository - Protein Structure Prediction

Protein:	RPC34
Organism:	Saccharomyces cerevisiae
Length:	317 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC34.

Description	E-value	Query Range	Subject Range
RPC34 - RNA polymerase III subunit C34; interacts with TFIIIB70 and is a key determinant in pol III recruitm... RPC6_YEAST - DNA-directed RNA polymerase III subunit RPC6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... gi\|207341597 - gi\|207341597\|gb\|EDZ69606.1\| YNR003Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408995 - gi\|190408995\|gb\|EDV12260.1\| RNA polymerase III 34 kDa subunit [Saccharomyces cerevisiae RM11-1a]	0.0	[1..317]	[1..317]
gi\|126035615 - gi\|126035615\|gb\|ABN72532.1\| DNA-directed RNA polymerase III polypeptide F [Mus spretus] RPC6_MOUSE - DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1	0.0	[23..268]	[25..263]
rpc34 - DNA-directed RNA polymerase III complex subunit Rpc34 RPC6_SCHPO - Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pombe (strain 972 / ATC...	1.0E-96	[11..268]	[8..265]
gi\|220959240, gi... - gi\|220959240\|gb\|ACL92163.1\| CG5380-PA [synthetic construct], gi\|220950288\|gb\|ACL87687.1\| CG5380-PA [... FBpp0293863, CG5... - This gene is referred to in FlyBase by the symbol Dmel\CG5380 (CG5380, FBgn0038951). It is a protein...	2.0E-84	[25..256]	[14..239]
CE14750 - status:Partially_confirmed UniProt:P91529 protein_id:AAC24412.1	5.0E-72	[29..255]	[27..243]
gi\|19074630, gi\|... - gi\|19074630\|ref\|NP_586136.1\| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon cuniculi... gi\|19074630 - ref\|NP_586136.1\| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon cuniculi]	2.0E-71	[28..256]	[13..220]
gi\|37202026, gi\|... - gi\|8809689\|dbj\|BAA97230.1\| unnamed protein product [Arabidopsis thaliana], gi\|37202026\|gb\|AAQ89628.1...	2.0E-58	[75..281]	[3..194]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGMIENGLQ LSDNAKTLHS QMMSKGIGAL FTQQELQKQM GIGSLTDLMS IVQELLDKNL  60
   61 IKLVKQNDEL KFQGVLESEA QKKATMSAEE ALVYSYIEAS GREGIWSKTI KARTNLHQHV 120
  121 VLKCLKSLES QRYVKSVKSV KFPTRKIYML YSLQPSVDIT GGPWFTDGEL DIEFINSLLT 180
  181 IVWRFISENT FPN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [194-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFKNFENGPK KNVFYAPNVK NYSTTQEILE FITAAQVANV ELTPSNIRSL CEVLVYDDKL  60
   61 EKVTHDCYRV TLESILQMNQ GEGEPEAGNK ALEDEEEFSI FNYFKMFPAS KHDKEVVYFD 120
  121 EWTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits