| Protein: | RPC34 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 317 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC34.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..317] | [1..317] |
|
|
0.0 | [23..268] | [25..263] |
|
|
1.0E-96 | [11..268] | [8..265] |
|
|
2.0E-84 | [25..256] | [14..239] |
|
|
5.0E-72 | [29..255] | [27..243] |
|
|
2.0E-71 | [28..256] | [13..220] |
|
|
2.0E-58 | [75..281] | [3..194] |
|
Region A: Residues: [1-193] |
1 11 21 31 41 51
| | | | | |
1 MSGMIENGLQ LSDNAKTLHS QMMSKGIGAL FTQQELQKQM GIGSLTDLMS IVQELLDKNL 60
61 IKLVKQNDEL KFQGVLESEA QKKATMSAEE ALVYSYIEAS GREGIWSKTI KARTNLHQHV 120
121 VLKCLKSLES QRYVKSVKSV KFPTRKIYML YSLQPSVDIT GGPWFTDGEL DIEFINSLLT 180
181 IVWRFISENT FPN
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [194-317] |
1 11 21 31 41 51
| | | | | |
1 GFKNFENGPK KNVFYAPNVK NYSTTQEILE FITAAQVANV ELTPSNIRSL CEVLVYDDKL 60
61 EKVTHDCYRV TLESILQMNQ GEGEPEAGNK ALEDEEEFSI FNYFKMFPAS KHDKEVVYFD 120
121 EWTI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.353 | a.118.1 | ARM repeat |
| View | Download | 0.532 | a.74.1 | Cyclin-like |
| View | Download | 0.479 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.399 | a.46.1 | Methionine synthase domain |
| View | Download | 0.532 | a.74.1 | Cyclin-like |
| View | Download | 0.479 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.399 | a.46.1 | Methionine synthase domain |
| View | Download | 0.364 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.364 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.353 | a.118.1 | ARM repeat |
| View | Download | 0.322 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.293 | a.118.8 | TPR-like |
| View | Download | 0.268 | a.158.1 | F-box domain |
| View | Download | 0.255 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.240 | a.74.1 | Cyclin-like |
| View | Download | 0.234 | f.1.5 | Exotoxin A, middle domain |
| View | Download | 0.225 | a.39.1 | EF-hand |
| View | Download | 0.222 | d.192.1 | YlxR-like |
| View | Download | 0.222 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.217 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.208 | a.39.1 | EF-hand |
| View | Download | 0.207 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.202 | a.118.8 | TPR-like |
