| Protein: | TRF5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 625 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRF5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..625] | [1..625] |
|
|
0.0 | [21..589] | [426..1051] |
|
|
0.0 | [15..537] | [45..555] |
|
|
0.0 | [7..513] | [602..1151] |
|
|
3.0E-90 | [67..520] | [20..453] |
|
|
5.0E-87 | [117..487] | [214..574] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MTRLKAKYSP TKGKRKEDKH TKRMRKSSFT RTQKMLEVFN DNRSHFNKYE SLAIDVEDDD 60
61 TFGNLVLMEN DKSDVDIPVI EEVTSSEDEQ RAESSKRNNS LEDNQDFIAF SDSSEDETEQ 120
121 IK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.282 | d.93.1 | SH2 domain |
| View | Download | 0.289 | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.289 | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.282 | d.93.1 | SH2 domain |
| View | Download | 0.247 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.247 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
|
Region A: Residues: [123-189] |
1 11 21 31 41 51
| | | | | |
1 EDDDERSSFL LTDEHEVSKL TSQQSLNTES ACNVEYPWIR NHCHSKQRRI ADWLTSEIKD 60
61 FVHYISP
|
|
Region B: Residues: [301-502] |
1 11 21 31 41 51
| | | | | |
1 AAKLIREWLR DSPGLRELVL IIKQFLHSRR LNNVHTGGLG GFTVICLVYS FLNMHPRIKS 60
61 NDIDVLDNLG VLLIDFFELY GKNFGYDDVA ISISDGYASY IPKSCWRTLE PSRSKFSLAI 120
121 QDPGDPNNNI SRGSFNMKDI KKAFAGAFEL LVNKCWELNS ATFKDRVGKS ILGNVIKYRG 180
181 QKRDFNDERD LVQNKAIIEN ER
|
| Detection Method: | |
| Confidence: | 65.09691 |
| Match: | 1f5aA_ |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleotidyltransferase activity | 6.98311287327254 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 5.66611091580726 | bayes_pls_golite062009 |
| transferase activity | 4.39508042323068 | bayes_pls_golite062009 |
| RNA binding | 3.35578898341041 | bayes_pls_golite062009 |
| nucleic acid binding | 2.53528619920768 | bayes_pls_golite062009 |
| DNA binding | 1.92558226050462 | bayes_pls_golite062009 |
| polynucleotide adenylyltransferase activity | 1.54779952898232 | bayes_pls_golite062009 |
| binding | 1.48092751553298 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.21103668998054 | bayes_pls_golite062009 |
| catalytic activity | 0.75232920999699 | bayes_pls_golite062009 |
| tubulin binding | 0.646904711098669 | bayes_pls_golite062009 |
| microtubule binding | 0.546269140865214 | bayes_pls_golite062009 |
| transcription factor binding | 0.303837517417996 | bayes_pls_golite062009 |
| protein binding | 0.117945573723438 | bayes_pls_golite062009 |
|
Region A: Residues: [190-300] |
1 11 21 31 41 51
| | | | | |
1 SKNEIKCRNR TIDKLRRAVK ELWSDADLHV FGSFATDLYL PGSDIDCVVN SRNRDKEDRN 60
61 YIYELARHLK NKGLAIRMEV IVKTRVPIIK FIEPQSQLHI DVSFERTNGL E
|
| Detection Method: | |
| Confidence: | 65.09691 |
| Match: | 1f5aA_ |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [503-625] |
1 11 21 31 41 51
| | | | | |
1 YHKRRTRIVQ EDLFINDTED LPVEEIYKLD EPAKKKQKAK KDKREGEIKK SAIPSPPPDF 60
61 GVSRSKLKRK VKKTDQGSLL HQNNLSIDDL MGLSENDQES DQDQKGRDTL RDKMRNHHWK 120
121 LRQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
