| Protein: | MSB3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 633 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSB3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..633] | [1..633] |
|
|
6.0E-91 | [36..628] | [5..537] |
|
|
1.0E-90 | [24..628] | [113..655] |
|
|
1.0E-83 | [24..615] | [565..1094] |
|
Region A: Residues: [1-131] |
1 11 21 31 41 51
| | | | | |
1 MQNDQQRFSL QNRTVLAHPY KRLGGAFTVK SPSVPNFHDK MHSDHSSSDS ALVNGSFRAN 60
61 DHRSVEPSCL GQASPSEHDG NLSVIDLYGD EVESQRAEGE DDDDNNGDNG NEDLEEVHSD 120
121 DLDLVPDDDN R
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.338 | a.1.1 | Globin-like |
| View | Download | 0.338 | a.1.1 | Globin-like |
| View | Download | 0.213 | c.26.1 | Nucleotidylyl transferase |
|
Region A: Residues: [132-363] |
1 11 21 31 41 51
| | | | | |
1 QRVELEGAAS ATSANSNGIN NTHFDRYGFK KQNNYISEAE YDKWWVEYSQ YCVRRKHKWQ 60
61 LLLEKSGLPV TDDSPSRFPS KSERLKRYVR KGIPAEWRGN AWWHFARGQE KLNKNKGVYS 120
121 QLLRKMKQIK KQNPNEKQVQ DLDIIERDLN RTFPDNIHFQ SSLHNKEGPP IIKSLRRVLV 180
181 AFSLYNPKIG YCQSMNFLAG LLLLFLDEER AFWMLVIITS RYLPGVHNIN LE
|
|
Region B: Residues: [447-458] |
1 11 21 31 41 51
| | | | | |
1 RIWDCLFYEE SH
|
| Detection Method: | |
| Confidence: | 37.154902 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [364-446] |
1 11 21 31 41 51
| | | | | |
1 GVNIDQGVLM LCVKEYIPEV WSYIKPSIDH HQKNNKTFSP SNKKVLFNMQ KNEFLYRLPP 60
61 ITLCTASWFM SCFVGVVPIE TTL
|
| Detection Method: | |
| Confidence: | 37.154902 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [459-525] |
1 11 21 31 41 51
| | | | | |
1 FLFKVSLAVL KLSEHDLSKI KPRNNSLNYS WGSNLNQRGG SMGQEDSDME IFQVIQTFPK 60
61 TLLNPNE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.551 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.548 | a.4.1 | Homeodomain-like |
| View | Download | 0.526 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.496 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.521 | a.46.1 | Methionine synthase domain |
| View | Download | 0.481 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.475 | a.4.1 | Homeodomain-like |
| View | Download | 0.467 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.453 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.420 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.413 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.407 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.405 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.402 | a.2.7 | tRNA-binding arm |
| View | Download | 0.363 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.356 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.354 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.340 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.331 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.324 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.317 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.313 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.312 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.307 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.301 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.294 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.294 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.291 | a.65.1 | Annexin |
| View | Download | 0.290 | a.4.1 | Homeodomain-like |
| View | Download | 0.287 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.286 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.284 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.282 | a.112.1 | Description not found. |
| View | Download | 0.278 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.274 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.273 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.269 | a.4.1 | Homeodomain-like |
| View | Download | 0.267 | a.60.8 | HRDC-like |
| View | Download | 0.261 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.255 | a.2.3 | Chaperone J-domain |
| View | Download | 0.254 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.253 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.249 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.242 | a.112.1 | Description not found. |
| View | Download | 0.239 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.236 | a.105.1 | FIS-like |
| View | Download | 0.235 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.228 | a.4.1 | Homeodomain-like |
| View | Download | 0.221 | d.120.1 | Cytochrome b5 |
| View | Download | 0.220 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.214 | a.3.1 | Cytochrome c |
| View | Download | 0.211 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [526-633] |
1 11 21 31 41 51
| | | | | |
1 IFEKIIFKRR FNLNRLDQDE IDRCRKFVAA QRLKFKTYGE LLGNSTSEAD LPINDNTDNK 60
61 GIHITSDAVN EALSSEVYGF KKSLAGVHWN NSIKEKVKQM RKKKDKGD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.223 | 0.081 | Rab GTPase activator activity | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.273 | 0.078 | Rab GTPase activator activity | d.80.1 | Tautomerase/MIF |
| View | Download | 0.230 | 0.060 | Rab GTPase activator activity | a.74.1 | Cyclin-like |
| View | Download | 0.294 | 0.053 | Rab GTPase activator activity | a.7.1 | Spectrin repeat |
| View | Download | 0.334 | 0.043 | Rab GTPase activator activity | a.7.8 | GAT domain |
| View | Download | 0.218 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.210 | N/A | N/A | a.74.1 | Cyclin-like |
