Protein: | MSB3 |
Organism: | Saccharomyces cerevisiae |
Length: | 633 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSB3.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..633] | [1..633] |
|
6.0E-91 | [36..628] | [5..537] |
|
1.0E-90 | [24..628] | [113..655] |
|
1.0E-83 | [24..615] | [565..1094] |
Region A: Residues: [1-131] |
1 11 21 31 41 51 | | | | | | 1 MQNDQQRFSL QNRTVLAHPY KRLGGAFTVK SPSVPNFHDK MHSDHSSSDS ALVNGSFRAN 60 61 DHRSVEPSCL GQASPSEHDG NLSVIDLYGD EVESQRAEGE DDDDNNGDNG NEDLEEVHSD 120 121 DLDLVPDDDN R |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [132-363] |
1 11 21 31 41 51 | | | | | | 1 QRVELEGAAS ATSANSNGIN NTHFDRYGFK KQNNYISEAE YDKWWVEYSQ YCVRRKHKWQ 60 61 LLLEKSGLPV TDDSPSRFPS KSERLKRYVR KGIPAEWRGN AWWHFARGQE KLNKNKGVYS 120 121 QLLRKMKQIK KQNPNEKQVQ DLDIIERDLN RTFPDNIHFQ SSLHNKEGPP IIKSLRRVLV 180 181 AFSLYNPKIG YCQSMNFLAG LLLLFLDEER AFWMLVIITS RYLPGVHNIN LE |
Region B: Residues: [447-458] |
1 11 21 31 41 51 | | | | | | 1 RIWDCLFYEE SH |
Detection Method: | |
Confidence: | 37.154902 |
Match: | 1fkmA_ |
Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [364-446] |
1 11 21 31 41 51 | | | | | | 1 GVNIDQGVLM LCVKEYIPEV WSYIKPSIDH HQKNNKTFSP SNKKVLFNMQ KNEFLYRLPP 60 61 ITLCTASWFM SCFVGVVPIE TTL |
Detection Method: | |
Confidence: | 37.154902 |
Match: | 1fkmA_ |
Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [459-525] |
1 11 21 31 41 51 | | | | | | 1 FLFKVSLAVL KLSEHDLSKI KPRNNSLNYS WGSNLNQRGG SMGQEDSDME IFQVIQTFPK 60 61 TLLNPNE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [526-633] |
1 11 21 31 41 51 | | | | | | 1 IFEKIIFKRR FNLNRLDQDE IDRCRKFVAA QRLKFKTYGE LLGNSTSEAD LPINDNTDNK 60 61 GIHITSDAVN EALSSEVYGF KKSLAGVHWN NSIKEKVKQM RKKKDKGD |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.