YRC Public Data Repository - Protein Structure Prediction

Protein:	WSC2
Organism:	Saccharomyces cerevisiae
Length:	503 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WSC2.

Description	E-value	Query Range	Subject Range
gi\|9695347 - gi\|9695347\|gb\|AAF97432.1\|U23947_9 VsaC1 [Mycoplasma pulmonis]	199.0	[0..15]	[458..46]
gi\|15828996 - gi\|15828996\|ref\|NP_326356.1\| lipoprotein VSAC (fragment) [Mycoplasma pulmonis UAB CTIP] gi\|14089939, gi\|... - pir\|\|E90577 lipoprotein vsaC [imported] - Mycoplasma pulmonis (strain UAB CTIP) (fragment), gi\|14089...	197.0	[0..15]	[483..215]
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1	196.0	[0..5]	[486..601]
gi\|70869911 - gi\|70869911\|gb\|EAN84377.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71407532 - gi\|71407532\|ref\|XP_806228.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	183.0	[0..6]	[460..688]
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	180.0	[0..3]	[501..1015]
SPBPJ4664.02 - glycoprotein YHU2_SCHPO - Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 OS=Schizosaccharomyces pombe (str...	176.0	[0..2]	[472..1593]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	170.0	[0..5]	[466..179]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLDLIHKSF ILVWLIYIRA ALADQFTYKA CYSASDIRKL GLTYKGVYEY QSVSYCQNEC  60
   61 PGQAVVALFN GTGCYCGGSV AQLQSLTQVD SSKCDVSCAG WPYQNCGG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.119186
Match:	PF01822
Description:	WSC domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSAMNVYINN AASTADSTSS TATSTSTTSS SSTSVSSKTS TKLDTKTSTS SSATHSSSSS  60
   61 STTSTTTSSS ETTTSSSSSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [189-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSTSTTST TSTTSSTTST SSSPSTTSSS TSASSSSETS STQATSSSTT STSSSTSTAT  60
   61 VTSTPSSTSI GTSTHYTTRV VTQSVVSQAN QQASTIFTTR TSVYATVSST SSSTSSLLNG 120
  121 KSSSSKSKGL SGGAIAGVVV GVVCGTVALL ALALFFFVWK KRRQSSQHVD LEETKQYQPY 180
  181 SLGDADANPV IPPSASSTNW HIPSRNNTAL SKNTASTFAT YDLPTRAPGG RDSIITGDAH 240
  241 NISKRSHFPS VVYEEPPSIY NGNQRFSATS LPDMMEERQL HIVNPDNVSS NIGSNVSDGD 300
  301 DDYDDAKDSN NSSLR

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	12.62
Match:
Description:	No description for 1ei3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits