| Protein: | SIN4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 974 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIN4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..974] | [1..974] |
|
Region A: Residues: [1-457] |
1 11 21 31 41 51
| | | | | |
1 MMLGEHLMSW SKTGIIAYSD SQSSNANICL TFLESINGIN WRFHTPQKYV LHPQLHEVQY 60
61 QESSSTLSTH STTTSVNGST TAGVGSTPNF GGNSNKSPPQ FFYNISSIHW NNWFSLPGDM 120
121 LAVCDELGNM TMLITGQRPD RATTYEKLTM VFQDNVYKIY NHVMPLKPVD KLKPMNIERK 180
181 QTRKEYNTSI LEFRWLTSSK SVIVSQFCAF DSSSNTYRSR AQQVPPYGVY HPPFIKYACL 240
241 AIRKNGQIDF WYQFSNSKDH KKITLQLLDT SNQRFKDLQW LEFARITPMN DDQCMLITTY 300
301 SKLSKNISFY KLHVNWNLNA TKPNVLNDPS LKIQFILSTT LDPTDDEGHV LKLENLHVVS 360
361 KSSIEKDPSP EILVLYNVCD TSKSLVKRYR LAPTQLSAEY LVILKPDLNI DRNNSTNQIF 420
421 QSRRYNLRRH SDIVLDKKVT LITSEMFDAF VSFYFED
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [458-641] |
1 11 21 31 41 51
| | | | | |
1 GTIESYNQND WKLETERLIS QSQLGKFKNI IASPLSAGFN YGKLPLPPSV EWMKVSPSMC 60
61 GVIVKQYNKK WPQFYAAVQK NYADPEKDSI NATALAFGYV KSLHKQISAE DLTIAAKTHI 120
121 LRISFLDRKR AKEFITTLLK SLYSFFNISP DAPKEIMDKI ITSRPLQKIM LLQLELGSCF 180
181 SQEN
|
|
Region B: Residues: [689-773] |
1 11 21 31 41 51
| | | | | |
1 IFSKQDLIHS LIPVAKWFVK FITYLTQEIL ILINDPTNKE YTLVHGIFGA KMSRTLILSI 60
61 LNEIKKVTQI VAKFPETSYP ILNES
|
| Detection Method: | |
| Confidence: | 7.83 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [642-688] |
1 11 21 31 41 51
| | | | | |
1 IEEMARVILY LKNVLFAFNG VARNFHFAIE QISNNSNQQQ NPKLFQT
|
| Detection Method: | |
| Confidence: | 7.83 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [774-974] |
1 11 21 31 41 51
| | | | | |
1 STFLKLVLSE SPVDFEKFET FLVDVNNKFI ALCEQQPSQE REFSLLVKAE IPPEYAKVGD 60
61 FLLQYANNAV ISHANAAAVY FADTSGLKIS NSEFFNPEIF HLLQPLEEGL IIDTDKLPIK 120
121 NRTSKSFSKL LYDDVTCDKL SVSEISDGKL KRCSRCGSVT RAGNIISSDK TIVPTSIQTK 180
181 RWPTMYTRLC ICSGMLFEMD G
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [691-807] |
1 11 21 31 41 51
| | | | | |
1 SKQDLIHSLI PVAKWFVKFI TYLTQEILIL INDPTNKEYT LVHGIFGAKM SRTLILSILN 60
61 EIKKVTQIVA KFPETSYPIL NESSTFLKLV LSESPVDFEK FETFLVDVNN KFIALCE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [808-974] |
1 11 21 31 41 51
| | | | | |
1 QQPSQEREFS LLVKAEIPPE YAKVGDFLLQ YANNAVISHA NAAAVYFADT SGLKISNSEF 60
61 FNPEIFHLLQ PLEEGLIIDT DKLPIKNRTS KSFSKLLYDD VTCDKLSVSE ISDGKLKRCS 120
121 RCGSVTRAGN IISSDKTIVP TSIQTKRWPT MYTRLCICSG MLFEMDG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
