| Protein: | SQS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 767 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SQS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..767] | [1..767] |
|
|
1.0E-74 | [466..767] | [363..672] |
|
|
5.0E-71 | [466..767] | [480..789] |
|
|
7.0E-69 | [466..767] | [512..826] |
|
Region A: Residues: [1-307] |
1 11 21 31 41 51
| | | | | |
1 MAKRHSHYQG SRRRHARGSN SKKAGRGNAK GIQGRKIKKK PTPTNSWHNS SIPLGEGDLD 60
61 DVGADFNPGR AFISPKTIED YYFGRDAKSR SMKMGGLRPG NRYDSSTDLQ AGRAAFRKRP 120
121 MQFVKAKEVY DPSHNMIQKL RAKNETKNSE EIVEREADVF EEPGKMTSDV EYINNEDSEN 180
181 EDDDSQNSPS TDHSLSSNES KVEDGDLFFV DEEAQQSPDL TKIKRVCIEE IARPREVAIE 240
241 FDPILTIGKV ELSVSEGNES KEISVDVPNK GNKTYHPFAG YISNVLHGMH TSDSDNDELD 300
301 YEIETEN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [308-371] |
1 11 21 31 41 51
| | | | | |
1 NSEPLYESSA SSEVDQGFNY VGQRHNSRAD NNLLPSPSPQ LTEDIKCLSI NGTKTFEGNN 60
61 DNLP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [372-718] |
1 11 21 31 41 51
| | | | | |
1 SPASEELEFG FKEEDFVINT NDIVVSNIRM GGVDNSYYLR CYRLLGDYDF HWIDQDLLTD 60
61 FVVDELGLPE DRLPAYLNFI KNSLIPKIEP AEPTYSDIPI SDSSDEGDSY EGDSYEDDED 120
121 MASSVVHSDI EEGLDDLIAY TLKHDTERFK TFETKSLETK GKGKKKKLLI DDALALDTET 180
181 LETLQSKFSK RIETKAKKRK AKEDFIDQEN RNSNDMLKKY PYGLHIQNIK DEFESFLSRN 240
241 NDRLTFPPLD PHGNKTVMKI AKHYNMKSSK IGKANHTSVV VEKIKKTKWS SPNYSLIDQL 300
301 MRQRPVFMRI DIRRPREEQA AFERTKTIRG KFHVKEGEIV GQNAPEI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [719-767] |
1 11 21 31 41 51
| | | | | |
1 GNENIGRRML EKLGWKSGEG LGIQGNKGIS EPIFAKIKKN RSGLRHSES
|
| Detection Method: | |
| Confidence: | 16.376751 |
| Match: | PF01585 |
| Description: | G-patch domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [531-683] |
1 11 21 31 41 51
| | | | | |
1 KGKGKKKKLL IDDALALDTE TLETLQSKFS KRIETKAKKR KAKEDFIDQE NRNSNDMLKK 60
61 YPYGLHIQNI KDEFESFLSR NNDRLTFPPL DPHGNKTVMK IAKHYNMKSS KIGKANHTSV 120
121 VVEKIKKTKW SSPNYSLIDQ LMRQRPVFMR IDI
|
| Detection Method: | |
| Confidence: | 1.38 |
| Match: | 1mszA |
| Description: | SmuBP-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 1.50596754488506 | bayes_pls_golite062009 |
| binding | 1.49983036545301 | bayes_pls_golite062009 |
| nucleic acid binding | 1.46911563206977 | bayes_pls_golite062009 |
| transcription regulator activity | 1.40070005217107 | bayes_pls_golite062009 |
| catalytic activity | 0.307971467423079 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.104498084588774 | bayes_pls_golite062009 |
| protein binding | 0.0446628977860376 | bayes_pls_golite062009 |
|
Region A: Residues: [684-767] |
1 11 21 31 41 51
| | | | | |
1 RRPREEQAAF ERTKTIRGKF HVKEGEIVGQ NAPEIGNENI GRRMLEKLGW KSGEGLGIQG 60
61 NKGISEPIFA KIKKNRSGLR HSES
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
