| Protein: | RAP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 827 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..827] | [1..827] |
|
|
0.0 | [1..827] | [1..826] |
|
|
0.0 | [104..827] | [1..666] |
|
|
0.0 | [359..827] | [231..687] |
|
|
6.0E-88 | [374..536] | [1..163] |
|
|
1.0E-82 | [374..537] | [1..164] |
|
|
0.003 | [42..206] | [248..412] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MSSPDDFETA PAEYVDALDP SMVVVDSGSA AVTAPSDSAA EVKANQNEEN TGATAAETSE 60
61 KVDQTEVEKK DDDDTTEVGV TTTTPSIADT AATANIASTS GAS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [104-269] |
1 11 21 31 41 51
| | | | | |
1 VTEPTTDDTA ADEKKEQVSG PPLSNMKFYL NRDADAHDSL NDIDQLARLI RANGGEVLDS 60
61 KPRESKENVF IVSPYNHTNL PTVTPTYIKA CCQSNSLLNM ENYLVPYDNF REVVDSRLQE 120
121 ESHSNGVDNS NSNSDNKDSI RPKTEIISTN TNGATEDSTS EKVMVD
|
| Detection Method: | |
| Confidence: | 7.52 |
| Match: | 1imoA |
| Description: | DNA ligase III alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [270-340] |
1 11 21 31 41 51
| | | | | |
1 AEQQARLQEQ AQLLRQHVSS TASITSGGHN DLVQIEQPQK DTSNNNNSNV NDEDNDLLTQ 60
61 DNNPQTADEG N
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [341-444] |
1 11 21 31 41 51
| | | | | |
1 ASFQAQRSMI SRGALPSHNK ASFTDEEDEF ILDVVRKNPT RRTTHTLYDE ISHYVPNHTG 60
61 NSIRHRFRVY LSKRLEYVYE VDKFGKLVRD DDGNLIKTKV LPPS
|
|
Region B: Residues: [588-616] |
1 11 21 31 41 51
| | | | | |
1 TPGNYNSAAK RARNYSSQRN VQPTANAAS
|
| Detection Method: | |
| Confidence: | 1518.0 |
| Match: | 1ignA_ |
| Description: | DNA-binding domain of rap1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [445-587] |
1 11 21 31 41 51
| | | | | |
1 IKRKFSADED YTLAIAVKKQ FYRDLFQIDP DTGRSLITDE DTPTAIARRN MTMDPNHVPG 60
61 SEPNFAAYRT QSRRGPIARE FFKHFAEEHA AHTENAWRDR FRKFLLAYGI DDYISYYEAE 120
121 KAQNREPEPM KNLTNRPKRP GVP
|
| Detection Method: | |
| Confidence: | 1518.0 |
| Match: | 1ignA_ |
| Description: | DNA-binding domain of rap1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [617-827] |
1 11 21 31 41 51
| | | | | |
1 ANAAAAAAAA ASNSYAIPEN ELLDEDTMNF ISSLKNDLSN ISNSLPFEYP HEIAEAIRSD 60
61 FSNEDIYDNI DPDTISFPPK IATTDLFLPL FFHFGSTRQF MDKLHEVISG DYEPSQAEKL 120
121 VQDLCDETGI RKNFSTSILT CLSGDLMVFP RYFLNMFKDN VNPPPNVPGI WTHDDDESLK 180
181 SNDQEQIRKL VKKHGTGRME MRKRFFEKDL L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
