| Protein: | WHI3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 661 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WHI3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..661] | [1..661] |
|
|
4.0E-76 | [240..627] | [54..462] |
|
|
6.0E-71 | [240..627] | [54..462] |
|
|
6.0E-62 | [286..625] | [221..553] |
|
|
1.0E-61 | [286..625] | [221..554] |
|
|
2.0E-61 | [286..625] | [191..521] |
|
|
7.0E-61 | [286..625] | [222..555] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MQSSVYFDQT GSFASSSDNV VSSTTNTHNI SPSHRSSLNL NTTSHPHEAS GRGSASGELY 60
61 LNDTNSPLAI SSMLNTLALG SMPQDIASSN ISNHDNNIK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.290 | a.1.1 | Globin-like |
| View | Download | 0.329 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.389 | d.170.1 | Scavenger receptor cysteine-rich (SRCR) domain |
| View | Download | 0.273 | d.214.1 | Hypothetical protein MTH1880 |
|
Region A: Residues: [100-504] |
1 11 21 31 41 51
| | | | | |
1 GSYSLKLSNV AKDITLRECY AIFALAEGVK SIELQKKNSS SSITSASLED ENDIFIIARF 60
61 ELLNLAINYA VILNSKNELF GPSFPNKTTV EIIDDTTKNL VSFPSSAIFN DTSRLNKSNS 120
121 GMKRPSLLSQ RSRFSFSDPF SNDSPLSQQQ SQQQQQQPQQ PQQHSTQKHS PQQCNQQQVN 180
181 SSIPLSSQGQ VIGLHSNHSH QDLSVESTIQ TSDIGKSFLL RDNTEINEKI WGTSGIPSSI 240
241 NGYMSTPQPS TPTLEWGNTS ASQHGSSFFL PSAASTAIAP TNSNTSANAN ASSNNGASNN 300
301 GANQALSASS QQPMMQIGNT INTSLTSSNS LPPYGLMSSQ SQHISNMVNT SDMNITPQKQ 360
361 NRFMQQPQPE HMYPVNQSNT PQKVPPARLS SSRNSHKNNS TTSLS
|
| Detection Method: | |
| Confidence: | 10.98 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [505-661] |
1 11 21 31 41 51
| | | | | |
1 SNITGSASIS QADLSLLARI PPPANPADQN PPCNTLYVGN LPSDATEQEL RQLFSGQEGF 60
61 RRLSFRNKNT TSNGHSHGPM CFVEFDDVSF ATRALAELYG RQLPRSTVSS KGGIRLSFSK 120
121 NPLGVRGPNS RRGGSGNPNP NVNMLSSYNS NVGHIKN
|
| Detection Method: | |
| Confidence: | 39.522879 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.64594243387558 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| mRNA binding | 2.76744192669109 | bayes_pls_golite062009 |
| RNA binding | 2.41328743949172 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 0.737458867828906 | bayes_pls_golite062009 |
| DNA binding | 0.691258294213766 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| structural molecule activity | 0.0829058000493267 | bayes_pls_golite062009 |
