| Protein: | APC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1748 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APC1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1748] | [1..1748] |
|
|
0.0 | [600..1419] | [734..1548] |
|
|
0.0 | [600..1419] | [734..1548] |
|
|
0.0 | [593..1419] | [434..1183] |
|
|
0.0 | [593..1419] | [434..1183] |
|
|
0.0 | [606..1421] | [939..1719] |
|
|
0.0 | [619..1421] | [817..1625] |
|
|
0.0 | [631..1416] | [586..1345] |
|
|
0.0 | [895..1423] | [587..1180] |
|
Region A: Residues: [1-591] |
1 11 21 31 41 51
| | | | | |
1 MTSKPSTRND YLPRETHNGE YTGDSPEWQL QINITNKIGG INGDIWLSRD GRSVKWCIED 60
61 QCLRQFTYNQ KIIKAGYIDF EKTPDCFVVV LSDIAHVYML KNGGSTTVCF PFQIGNAFWY 120
121 ANGVILERET SASFMDGGYD LKPIEFDLKH KYITLTDPMA PFGLISITNT FKGGINSASG 180
181 NKTDILQDFQ LVLFPSDKDK CIAVFLDRNS KVLRFYYSRI LSSDQSRKGE LTISSTKKTG 240
241 LDAAGNSQKS GGISKDLRKF SHLTRRSTSI NSNSHDFNAA ERVLSGNVGN ASGRTDIFAL 300
301 PSSCSRRSLS ATLDRMGNNI APTNRAAPSG FFDSSSANTA THSNITPVSQ PMQQQQQEYL 360
361 NQTATSSKDI VLTEISSLKL PDDIIFTSRR LSSILSKLKF LSLRFERREG LLIFHEPTHF 420
421 CKIWLIDLLP DVLDSIPFKI YGNSPQNMIR LENLKLKEPS RIQAMYIHEL LESCLILVSE 480
481 GQNKEEYKAC LYDPFVKITS PSKNISEELT KQNSLPSLQK LFPYPETSFT KLCFEAVKYI 540
541 TSPAFNISFI FLWQSAYSIL LSRANDDVVG GLKMEHDAFS LVLSLLILPI P
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [592-1445] |
1 11 21 31 41 51
| | | | | |
1 SSSAQEYQEY KEIYERDLFQ HLKQDSEITS SVLPRIVIGL HLIREEYSLN VLCRNEHALL 60
61 GQFLRFATAA MGWPDLWQSY YVPKMDSESK TFLHPREQNS TFFHPLDEPP SITKSLYSIT 120
121 ENSSIPLCPF ISFSRLVATD TQVELRITPR SFKILGLYEL VHSPNFLPDY VLGILSSFKV 180
181 DKDELQTYPL GILVPLQNIL KILEDKLSEV RDNLELLDRA DLQRCSAIIN SIRSDSKEVL 240
241 KRGQRDSYML CKVPLAKNRS SLSKKPSDIY SILSEIVKSA SQVPLDGSAM RMSNIQDDED 300
301 IDEGRSLKLN AGLIFSEDKR FTHVVSLLAY YRPTKTQFFT TKTEYAQILA QKKYFAKIMA 360
361 LRTCTNGVGW GAVAYATEKP ISTQKWVIQP LNLISVFPDD TKITVKAPED IAHDIVEWGQ 420
421 FHAGVSSGLR ISKKATGITG SWIAFNKPKE LDAYHGGFLL GLGLNGHLKN LEEWHIYNYL 480
481 SPRNTHISIG LLLGMSSSMK GSMDSKLIKV ISVHLVAFLP SGSSDLNIDL KLQTAGIIGM 540
541 GMLYLNSRHK RMSDSIFAQL VSLLNVNDEM VADEEYRLAA GISLGLINLG AGQTKLRKWD 600
601 SSLLGLGDDL PEDVYDSSDV EQNVMYEDLT TKLLEIVTST YDVENDWIPE NSQIGAVIAI 660
661 MFLFLKSNNF GISNMLKVDL KEILKANINT RPELLMYREW ASNMILWEFI GDDLSFIMKD 720
721 VDIGVKFSEL NTDLLPIYYT MAGRILAMGI RFASTGNLKI RNILLSLVDK FLPLYQYPGK 780
781 QNLDFRLTIS VINVLTNVIV VSLSMVMCAS GDLEVLRRVK YLHEVASGPY SDLFQEIPSS 840
841 KSDVSGVTQV TSNT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1446-1562] |
1 11 21 31 41 51
| | | | | |
1 NTPGNSDRER VDETAASLDD ERSSNGSDIS DPTAYLEDKK DIDDHYGKFI STNLALGFLF 60
61 LGSGQYALNT STLESIAFLS MSVLPTYTTP HPLQELKHFW SIAVEPRCLV IKDISTG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1563-1645] |
1 11 21 31 41 51
| | | | | |
1 DAVNNVPIEL VVEEDVEKEE VIREISTPCL LPDFSKIKSI RVKMHGYFPL EVNFTKDYSA 60
61 SDFFSGGTII YIQRKSESVF ENK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1646-1748] |
1 11 21 31 41 51
| | | | | |
1 ASFRNVEDIH VALKRKAAES KNYSRLNLKN EQGNTTSSQL VESLGIQDLT MVELDTLLSA 60
61 GNNTALTDSE SYNLGLLCSD KNSGDILDCQ LELWYKSFGP HDE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [885-970] |
1 11 21 31 41 51
| | | | | |
1 NIQDDEDIDE GRSLKLNAGL IFSEDKRFTH VVSLLAYYRP TKTQFFTTKT EYAQILAQKK 60
61 YFAKIMALRT CTNGVGWGAV AYATEK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [971-1025] |
1 11 21 31 41 51
| | | | | |
1 PISTQKWVIQ PLNLISVFPD DTKITVKAPE DIAHDIVEWG QFHAGVSSGL RISKK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1026-1748] |
1 11 21 31 41 51
| | | | | |
1 ATGITGSWIA FNKPKELDAY HGGFLLGLGL NGHLKNLEEW HIYNYLSPRN THISIGLLLG 60
61 MSSSMKGSMD SKLIKVISVH LVAFLPSGSS DLNIDLKLQT AGIIGMGMLY LNSRHKRMSD 120
121 SIFAQLVSLL NVNDEMVADE EYRLAAGISL GLINLGAGQT KLRKWDSSLL GLGDDLPEDV 180
181 YDSSDVEQNV MYEDLTTKLL EIVTSTYDVE NDWIPENSQI GAVIAIMFLF LKSNNFGISN 240
241 MLKVDLKEIL KANINTRPEL LMYREWASNM ILWEFIGDDL SFIMKDVDIG VKFSELNTDL 300
301 LPIYYTMAGR ILAMGIRFAS TGNLKIRNIL LSLVDKFLPL YQYPGKQNLD FRLTISVINV 360
361 LTNVIVVSLS MVMCASGDLE VLRRVKYLHE VASGPYSDLF QEIPSSKSDV SGVTQVTSNT 420
421 NTPGNSDRER VDETAASLDD ERSSNGSDIS DPTAYLEDKK DIDDHYGKFI STNLALGFLF 480
481 LGSGQYALNT STLESIAFLS MSVLPTYTTP HPLQELKHFW SIAVEPRCLV IKDISTGDAV 540
541 NNVPIELVVE EDVEKEEVIR EISTPCLLPD FSKIKSIRVK MHGYFPLEVN FTKDYSASDF 600
601 FSGGTIIYIQ RKSESVFENK ASFRNVEDIH VALKRKAAES KNYSRLNLKN EQGNTTSSQL 660
661 VESLGIQDLT MVELDTLLSA GNNTALTDSE SYNLGLLCSD KNSGDILDCQ LELWYKSFGP 720
721 HDE
|
| Detection Method: | |
| Confidence: | 0.951 |
| Match: | 2ie3A |
| Description: | No description for 2ie3A was found. |
| Term | Confidence | Notes |
| binding | 2.81296846555705 | bayes_pls_golite062009 |
| protein binding | 1.81870125631028 | bayes_pls_golite062009 |
| nucleic acid binding | 1.08079130332447 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.73539719922204 | bayes_pls_golite062009 |
| hydrolase activity | 0.46329207154863 | bayes_pls_golite062009 |
| protein kinase activity | 0.317596068919701 | bayes_pls_golite062009 |
| DNA binding | 0.180353635969032 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0926408709390653 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0196841005896076 | bayes_pls_golite062009 |
| actin binding | 0.00917667862812865 | bayes_pls_golite062009 |
