| Protein: | DCP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 970 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..970] | [1..970] |
|
|
2.0E-61 | [14..238] | [8..242] |
|
|
4.0E-57 | [24..245] | [114..342] |
|
|
1.0E-54 | [14..257] | [7..255] |
|
|
3.0E-52 | [14..258] | [2..232] |
|
|
3.0E-48 | [14..200] | [172..362] |
|
|
3.0E-33 | [107..294] | [2..190] |
|
|
1.0E-26 | [67..227] | [35..191] |
|
Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MSLPLRHALE NVTSVDRILE DLLVRFIINC PNEDLSSVER ELFHFEEASW FYTDFIKLMN 60
61 PTLP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.711 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.732 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.627 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.650 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.606 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.604 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.598 | a.64.1 | Saposin |
| View | Download | 0.571 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.565 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.558 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.553 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.531 | a.126.1 | Serum albumin-like |
| View | Download | 0.529 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.459 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.456 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.450 | a.2.7 | tRNA-binding arm |
| View | Download | 0.442 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.442 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.439 | d.6.1 | Prion-like |
| View | Download | 0.401 | a.39.1 | EF-hand |
| View | Download | 0.392 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.388 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.374 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.373 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.371 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.361 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.359 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.357 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.356 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.348 | d.58.17 | Metal-binding domain |
| View | Download | 0.333 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.329 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.327 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.324 | a.39.1 | EF-hand |
| View | Download | 0.320 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.315 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.311 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.311 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.308 | a.158.1 | F-box domain |
| View | Download | 0.305 | a.46.1 | Methionine synthase domain |
| View | Download | 0.303 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.303 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.302 | g.2.2 | Neurotoxin B-IV |
| View | Download | 0.297 | a.2.3 | Chaperone J-domain |
| View | Download | 0.295 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.292 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.276 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.272 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.271 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.268 | a.118.8 | TPR-like |
| View | Download | 0.266 | a.77.1 | DEATH domain |
| View | Download | 0.266 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.265 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.264 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.262 | a.2.3 | Chaperone J-domain |
| View | Download | 0.259 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.254 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.247 | a.64.1 | Saposin |
| View | Download | 0.241 | a.5.2 | UBA-like |
| View | Download | 0.236 | a.4.1 | Homeodomain-like |
| View | Download | 0.233 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.232 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.230 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.228 | a.2.7 | tRNA-binding arm |
| View | Download | 0.228 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.221 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.220 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.220 | a.112.1 | Description not found. |
| View | Download | 0.218 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.218 | a.30.1 | ROP protein |
| View | Download | 0.218 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.217 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.212 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.208 | a.118.1 | ARM repeat |
| View | Download | 0.205 | a.42.1 | MDM2 |
| View | Download | 0.205 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.204 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.200 | a.3.1 | Cytochrome c |
|
Region A: Residues: [65-267] |
1 11 21 31 41 51
| | | | | |
1 SLKIKSFAQL IIKLCPLVWK WDIRVDEALQ QFSKYKKSIP VRGAAIFNEN LSKILLVQGT 60
61 ESDSWSFPRG KISKDENDID CCIREVKEEI GFDLTDYIDD NQFIERNIQG KNYKIFLISG 120
121 VSEVFNFKPQ VRNEIDKIEW FDFKKISKTM YKSNIKYYLI NSMMRPLSMW LRHQRQIKNE 180
181 DQLKSYAEEQ LKLLLGITKE EQI
|
| Detection Method: | |
| Confidence: | 19.0 |
| Match: | 1mut__ |
| Description: | Nucleoside triphosphate pyrophosphorylase (MutT) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [268-508] |
1 11 21 31 41 51
| | | | | |
1 DPGRELLNML HTAVQANSNN NAVSNGQVPS SQELQHLKEQ SGEHNQQKDQ QSSFSSQQQP 60
61 SIFPSLSEPF ANNKNVIPPT MPMANVFMSN PQLFATMNGQ PFAPFPFMLP LTNNSNSANP 120
121 IPTPVPPNFN APPNPMAFGV PNMHNLSGPA VSQPFSLPPA PLPRDSGYSS SSPGQLLDIL 180
181 NSKKPDSNVQ SSKKPKLKIL QRGTDLNSIK QNNNDETAHS NSQALLDLLK KPTSSQKIHA 240
241 S
|
| Detection Method: | |
| Confidence: | 11.75 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [509-587] |
1 11 21 31 41 51
| | | | | |
1 KPDTSFLPND SVSGIQDAEY EDFESSSDEE VETARDERNS LNVDIGVNVM PSEKDSRRSQ 60
61 KEKPRNDASK TNLNASAES
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.415 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.359 | a.64.1 | Saposin |
| View | Download | 0.356 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.430 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.357 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.338 | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
| View | Download | 0.330 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.328 | a.3.1 | Cytochrome c |
| View | Download | 0.273 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.273 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.261 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.261 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.255 | a.4.1 | Homeodomain-like |
| View | Download | 0.253 | a.17.1 | p8-MTCP1 |
| View | Download | 0.248 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.232 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.218 | a.7.6 | Ribosomal protein S20 |
|
Region A: Residues: [588-594] |
1 11 21 31 41 51
| | | | | |
1 NSVEWGP
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|
Region B: Residues: [821-903] |
1 11 21 31 41 51
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1 KNSAKGLLNI LKKNDSTGYP RTEGGPSSEM STSMKRNDAT NNQELDKNST ELLNYLKPKP 60
61 LNDGYENISN KDSSHELLNI LHG
|
| Detection Method: | |
| Confidence: | 8.74 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [595-667] |
1 11 21 31 41 51
| | | | | |
1 GKSSPSTQSK QNSSVGMQNK YRQEIHIGDS DAYEVFESSS DEEDGKKLEE LEQTQDNSKL 60
61 ISQDILKENN FQD
|
| Detection Method: | |
| Confidence: | 8.74 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [668-750] |
1 11 21 31 41 51
| | | | | |
1 GEVPHRDMPT ESNKSINETV GLSSTTNTVK KVPKVKILKR GETFASLAND KKAFDSSSNV 60
61 SSSKDLLQML RNPISSTVSS NQQ
|
| Detection Method: | |
| Confidence: | 8.74 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [751-820] |
1 11 21 31 41 51
| | | | | |
1 SPKSQHLSGD EEIMMMLKRN SVSKPQNSEE NASTSSINDA NASELLGMLK QKEKDITAPK 60
61 QPYNVDSYSQ
|
| Detection Method: | |
| Confidence: | 8.74 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [904-970] |
1 11 21 31 41 51
| | | | | |
1 NKNSSAFNNN VYATDGYSLA SDNNENSSNK LLNMLQNRSS AINEPNFDVR SNGTSGSNEL 60
61 LSILHRK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.435 | a.3.1 | Cytochrome c |
| View | Download | 0.489 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.391 | a.64.1 | Saposin |
| View | Download | 0.415 | a.112.1 | Description not found. |
| View | Download | 0.374 | a.4.1 | Homeodomain-like |
| View | Download | 0.366 | a.64.1 | Saposin |
| View | Download | 0.306 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.305 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.300 | a.28.1 | ACP-like |
| View | Download | 0.295 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.289 | a.39.1 | EF-hand |
| View | Download | 0.281 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.264 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.247 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.235 | a.140.1 | LEM domain |
| View | Download | 0.228 | a.28.1 | ACP-like |
| View | Download | 0.228 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.220 | a.3.1 | Cytochrome c |
| View | Download | 0.203 | d.68.3 | SirA-like |
