| Protein: | SLM2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 656 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLM2.
| Description | E-value | Query Range |
Subject Range |
|
|
563.0 | [0..14] | [645..25] |
|
|
357.0 | [0..1] | [625..1] |
|
|
350.0 | [0..137] | [571..219] |
|
|
331.0 | [0..166] | [649..36] |
|
|
298.0 | [0..119] | [634..188] |
|
|
284.0 | [0..189] | [615..115] |
|
|
276.0 | [0..189] | [615..19] |
|
|
276.0 | [0..189] | [612..207] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MSYQRNSARA SLDLRSQYQQ LEGRMRSEHF NPAYQQQQQK GQNIPLSLPS SLAQRNPIPY 60
61 PIDAVTSDPT IPAQLNVYDH DRQNSIVDAA AGTNTTHSLN SNNIPSSQNN NINNNNINNV 120
121 G
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.367 | d.82.2 | Frataxin-like |
| View | Download | 0.350 | b.55.1 | PH domain-like |
| View | Download | 0.344 | b.55.1 | PH domain-like |
| View | Download | 0.271 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.271 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.267 | b.60.1 | Lipocalins |
| View | Download | 0.265 | c.23.1 | CheY-like |
| View | Download | 0.224 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.210 | b.55.1 | PH domain-like |
| View | Download | 0.207 | d.93.1 | SH2 domain |
|
Region A: Residues: [122-289] |
1 11 21 31 41 51
| | | | | |
1 SFTDPSMLTL PKMSLHSHQK QYDSNQNDPR SPLAILIPTS AQPTDVLSAR FSAWRNVIRA 60
61 ILVYLSETAS IQDEIVRQQL RLSHAVQFPF FSIENQYQPV SNEDKSMQKF FLPLGSGSVQ 120
121 DLPTMLTKYH DNLASLASKS SKELTSEIIP RLEDLRRDLL VKIKEIKA
|
| Detection Method: | |
| Confidence: | 8.2 |
| Match: | |
| Description: | No description for 1i84S was found. |
|
Region A: Residues: [290-404] |
1 11 21 31 41 51
| | | | | |
1 LQSDFKNSCN KELQQTKHLM KLFNESLKEC KLGTPKSDPF LIKLQLEKQI KRQLVEENYL 60
61 HEAFDNLQNS GAQLESVIVM EIQNGLTSYA RILGKEAQVV FDSVISKLDS TILNK
|
| Detection Method: | |
| Confidence: | 8.2 |
| Match: | |
| Description: | No description for 1i84S was found. |
|
Region A: Residues: [405-595] |
1 11 21 31 41 51
| | | | | |
1 NTNLEWDSFI LRNISNFVPP NLPMRRFKEI SYSNQNDPFT FEVKSGFLEK RSKFLKSYSR 60
61 GFYVLTPSFL HEFKTPDKHK FSTPLMSIPL VECTVTEHSK KTKSNSEQGK NKFILRTNSN 120
121 GLIHRGHNWV FKVDSYDDMI EWFGNIKALS SLPNYDDKCK YVSKVAKLSK EKAKSNENTT 180
181 ESVTPQVTNE Q
|
| Detection Method: | |
| Confidence: | 48.594777 |
| Match: | 1fhwA |
| Description: | Grp1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [596-656] |
1 11 21 31 41 51
| | | | | |
1 HTRYDDVSSS NFPLNSIPKL DNLTITNTTS SIPETNDSQI QNRVPEFYIE NVDSPRKSNQ 60
61 L
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.788 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.773 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.773 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.772 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.710 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.637 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.446 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.443 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.419 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.402 | a.60.2 | RuvA domain 2-like |
