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View Structure Prediction Details

Protein: DYN3
Organism: Saccharomyces cerevisiae
Length: 312 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DYN3.

Description E-value Query
Range
Subject
Range
DYN3_YEAST - Cytoplasmic dynein intermediate light chain DYN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...
gi|151946007 - gi|151946007|gb|EDN64239.1| Light intermediate chain of dynein [Saccharomyces cerevisiae YJM789]
DYN3 - Dynein light intermediate chain (LIC); localizes with dynein, null mutant is defective in nuclear mi...
gi|190408525 - gi|190408525|gb|EDV11790.1| light intermediate chain of dynein [Saccharomyces cerevisiae RM11-1a]
gi|207342050 - gi|207342050|gb|EDZ69931.1| YMR299Cp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..312] [1..312]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNCNAWDKL LSQNESTINS TETATITAII YSPSSKTLHQ FINICFPEGS NSILDTTLIN  60
   61 YATIGWTNDL KENYSVDVYT LIRNTDDALD LLKPFLQEHS SKVRWLILLD WTLNDQKLWL 120
  121 NELSYAFNKI KQLNDDN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.778 0.097 cytoplasm c.26.1 Nucleotidylyl transferase
View Download 0.794 0.097 cytoplasm c.23.5 Flavoproteins
View Download 0.890 0.097 cytoplasm c.23.1 CheY-like
View Download 0.836 0.097 cytoplasm c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.802 0.097 cytoplasm c.23.1 CheY-like
View Download 0.772 0.097 cytoplasm c.52.2 tRNA splicing endonuclease, C-terminal domain
View Download 0.753 0.097 cytoplasm c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.724 0.097 cytoplasm c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.723 0.097 cytoplasm c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.720 0.097 cytoplasm c.23.10 SGHN hydrolase
View Download 0.719 0.097 cytoplasm c.1.1 Triosephosphate isomerase (TIM)
View Download 0.713 0.097 cytoplasm c.16.1 Lumazine synthase
View Download 0.705 0.097 cytoplasm c.78.1 Aspartate/ornithine carbamoyltransferase
View Download 0.702 0.097 cytoplasm c.23.4 Succinyl-CoA synthetase domains
View Download 0.702 0.097 cytoplasm c.23.13 Type II 3-dehydroquinate dehydratase
View Download 0.675 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.667 0.097 cytoplasm d.140.1 Ribosomal protein S8
View Download 0.666 0.097 cytoplasm d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.663 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.663 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.648 0.097 cytoplasm c.52.1 Restriction endonuclease-like
View Download 0.639 0.097 cytoplasm c.23.4 Succinyl-CoA synthetase domains
View Download 0.639 0.097 cytoplasm c.44.2 Enzyme IIB-cellobiose
View Download 0.631 0.097 cytoplasm c.49.1 Pyruvate kinase, C-terminal domain
View Download 0.607 0.097 cytoplasm c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.599 0.097 cytoplasm c.23.5 Flavoproteins
View Download 0.596 0.097 cytoplasm c.52.3 Eukaryotic RPB5 N-terminal domain
View Download 0.595 0.097 cytoplasm c.23.5 Flavoproteins
View Download 0.594 0.097 cytoplasm c.56.1 HybD-like
View Download 0.591 0.097 cytoplasm c.48.1 TK C-terminal domain-like
View Download 0.589 0.097 cytoplasm c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.589 0.097 cytoplasm c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.588 0.097 cytoplasm d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.585 0.097 cytoplasm c.49.1 Pyruvate kinase, C-terminal domain
View Download 0.580 0.097 cytoplasm c.44.1 Phosphotyrosine protein phosphatases I
View Download 0.568 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.558 0.097 cytoplasm c.23.1 CheY-like
View Download 0.546 0.097 cytoplasm c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.544 0.097 cytoplasm d.93.1 SH2 domain
View Download 0.543 0.097 cytoplasm c.52.1 Restriction endonuclease-like
View Download 0.542 0.097 cytoplasm c.23.5 Flavoproteins
View Download 0.535 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.529 0.097 cytoplasm c.16.1 Lumazine synthase
View Download 0.528 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.523 0.097 cytoplasm c.23.1 CheY-like
View Download 0.514 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.514 0.097 cytoplasm c.48.1 TK C-terminal domain-like
View Download 0.513 0.097 cytoplasm c.57.1 Molybdenum cofactor biosynthesis proteins
View Download 0.510 0.097 cytoplasm c.40.1 Methylesterase CheB, C-terminal domain
View Download 0.508 0.097 cytoplasm d.109.1 Actin depolymerizing proteins
View Download 0.506 0.097 cytoplasm c.47.1 Thioredoxin-like
View Download 0.500 0.097 cytoplasm c.23.12 Formate/glycerate dehydrogenase catalytic domain-like
View Download 0.497 0.097 cytoplasm c.23.12 Formate/glycerate dehydrogenase catalytic domain-like
View Download 0.492 0.097 cytoplasm c.23.1 CheY-like
View Download 0.491 0.097 cytoplasm c.32.1 Tubulin/Dihydroxyacetone kinase nucleotide-binding domain
View Download 0.490 0.097 cytoplasm c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.484 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.482 0.097 cytoplasm c.30.1 PreATP-grasp domain
View Download 0.482 0.097 cytoplasm c.95.1 Thiolase-like
View Download 0.480 0.097 cytoplasm c.47.1 Thioredoxin-like
View Download 0.473 0.097 cytoplasm c.36.1 Thiamin diphosphate-binding fold (THDP-binding)
View Download 0.464 0.097 cytoplasm d.109.1 Actin depolymerizing proteins
View Download 0.462 0.097 cytoplasm c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.460 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.459 0.097 cytoplasm c.100.1 Thiamin pyrophosphokinase, catalytic domain
View Download 0.457 0.097 cytoplasm c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.455 0.097 cytoplasm c.115.1 Hypothetical protein MTH777 (MT0777)
View Download 0.452 0.097 cytoplasm c.116.1 alpha/beta knot
View Download 0.451 0.097 cytoplasm d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.448 0.097 cytoplasm c.61.1 PRTase-like
View Download 0.444 0.097 cytoplasm a.1.1 Globin-like
View Download 0.442 0.097 cytoplasm c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.438 0.097 cytoplasm c.10.1 RNI-like
View Download 0.430 0.097 cytoplasm c.23.1 CheY-like
View Download 0.426 0.097 cytoplasm c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.416 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.413 0.097 cytoplasm c.23.8 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
View Download 0.413 0.097 cytoplasm c.55.3 Ribonuclease H-like
View Download 0.405 0.097 cytoplasm d.208.1 MTH1598-like
View Download 0.401 0.097 cytoplasm c.69.1 alpha/beta-Hydrolases
View Download 0.399 0.097 cytoplasm c.48.1 TK C-terminal domain-like
View Download 0.394 0.097 cytoplasm c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.394 0.097 cytoplasm c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.391 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.385 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.384 0.097 cytoplasm c.57.1 Molybdenum cofactor biosynthesis proteins
View Download 0.383 0.097 cytoplasm c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.382 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.375 0.097 cytoplasm c.48.1 TK C-terminal domain-like
View Download 0.375 0.097 cytoplasm c.48.1 TK C-terminal domain-like
View Download 0.367 0.097 cytoplasm c.56.2 Purine and uridine phosphorylases
View Download 0.359 0.097 cytoplasm c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.344 0.097 cytoplasm c.36.1 Thiamin diphosphate-binding fold (THDP-binding)
View Download 0.342 0.097 cytoplasm c.20.1 Initiation factor IF2/eIF5b, domain 3
View Download 0.341 0.097 cytoplasm c.54.1 IIA domain of mannose transporter, IIA-Man
View Download 0.335 0.097 cytoplasm d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.334 0.097 cytoplasm c.108.1 HAD-like
View Download 0.334 0.097 cytoplasm d.109.1 Actin depolymerizing proteins
View Download 0.331 0.097 cytoplasm c.1.17 Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
View Download 0.330 0.097 cytoplasm c.61.1 PRTase-like
View Download 0.327 0.097 cytoplasm c.23.1 CheY-like
View Download 0.326 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.325 0.097 cytoplasm c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.323 0.097 cytoplasm d.218.1 Nucleotidyltransferase
View Download 0.322 0.097 cytoplasm b.6.1 Cupredoxins
View Download 0.321 0.097 cytoplasm c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.321 0.097 cytoplasm a.25.1 Ferritin-like
View Download 0.318 0.097 cytoplasm c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.317 0.097 cytoplasm c.23.1 CheY-like
View Download 0.317 0.097 cytoplasm c.57.1 Molybdenum cofactor biosynthesis proteins
View Download 0.316 0.097 cytoplasm c.110.1 D-Tyr tRNAtyr deacylase, DTD
View Download 0.315 0.097 cytoplasm c.61.1 PRTase-like
View Download 0.314 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.312 0.097 cytoplasm d.134.1 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
View Download 0.310 0.097 cytoplasm b.61.4 Quinohemoprotein amine dehydrogenase A chain, domain 3
View Download 0.304 0.097 cytoplasm c.84.1 Phosphoglucomutase, first 3 domains
View Download 0.304 0.097 cytoplasm c.23.1 CheY-like
View Download 0.300 0.097 cytoplasm c.36.1 Thiamin diphosphate-binding fold (THDP-binding)
View Download 0.298 0.097 cytoplasm d.89.1 Origin of replication-binding domain, RBD-like
View Download 0.297 0.097 cytoplasm c.1.10 Aldolase
View Download 0.296 0.097 cytoplasm c.1.10 Aldolase
View Download 0.295 0.097 cytoplasm c.10.2 L domain-like
View Download 0.294 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.293 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.292 0.097 cytoplasm c.23.5 Flavoproteins
View Download 0.289 0.097 cytoplasm c.17.1 Caspase-like
View Download 0.288 0.097 cytoplasm c.23.5 Flavoproteins
View Download 0.288 0.097 cytoplasm c.1.11 Enolase C-terminal domain-like
View Download 0.287 0.097 cytoplasm b.1.18 E set domains
View Download 0.286 0.097 cytoplasm c.34.1 DFP DNA/pantothenate metabolism flavoprotein
View Download 0.282 0.097 cytoplasm d.14.1 Ribosomal protein S5 domain 2-like
View Download 0.281 0.097 cytoplasm c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
View Download 0.280 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.271 0.097 cytoplasm c.47.1 Thioredoxin-like
View Download 0.270 0.097 cytoplasm c.16.1 Lumazine synthase
View Download 0.265 0.097 cytoplasm c.33.1 Cysteine hydrolase
View Download 0.262 0.097 cytoplasm c.36.1 Thiamin diphosphate-binding fold (THDP-binding)
View Download 0.261 0.097 cytoplasm c.80.1 SIS domain
View Download 0.260 0.097 cytoplasm c.95.1 Thiolase-like
View Download 0.259 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.259 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.253 0.097 cytoplasm c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.252 0.097 cytoplasm c.31.1 DHS-like NAD/FAD-binding domain
View Download 0.252 0.097 cytoplasm c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
View Download 0.251 0.097 cytoplasm d.218.1 Nucleotidyltransferase
View Download 0.251 0.097 cytoplasm d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View Download 0.248 0.097 cytoplasm c.45.1 (Phosphotyrosine protein) phosphatases II
View Download 0.245 0.097 cytoplasm c.33.1 Cysteine hydrolase
View Download 0.244 0.097 cytoplasm c.33.1 Cysteine hydrolase
View Download 0.244 0.097 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.243 0.097 cytoplasm c.1.21 Dihydropteroate synthetase-like
View Download 0.243 0.097 cytoplasm c.23.15 Ribosomal protein S2
View Download 0.242 0.097 cytoplasm d.79.2 Tubulin/Dihydroxyacetone kinase C-terminal domain
View Download 0.241 0.097 cytoplasm c.56.4 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
View Download 0.238 0.097 cytoplasm c.26.1 Nucleotidylyl transferase
View Download 0.237 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.236 0.097 cytoplasm d.199.1 DNA-binding C-terminal domain of the transcription factor MotA
View Download 0.234 0.097 cytoplasm d.14.1 Ribosomal protein S5 domain 2-like
View Download 0.233 0.097 cytoplasm c.1.2 Ribulose-phoshate binding barrel
View Download 0.232 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.231 0.097 cytoplasm d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
View Download 0.230 0.097 cytoplasm c.34.1 DFP DNA/pantothenate metabolism flavoprotein
View Download 0.229 0.097 cytoplasm c.78.2 Aspartate/glutamate racemase
View Download 0.227 0.097 cytoplasm c.30.1 PreATP-grasp domain
View Download 0.224 0.097 cytoplasm c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.223 0.097 cytoplasm a.77.1 DEATH domain
View Download 0.223 0.097 cytoplasm d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.223 0.097 cytoplasm c.1.8 (Trans)glycosidases
View Download 0.221 0.097 cytoplasm d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View Download 0.220 0.097 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.218 0.097 cytoplasm c.23.14 Nucleoside 2-deoxyribosyltransferase
View Download 0.217 0.097 cytoplasm a.1.1 Globin-like
View Download 0.216 0.097 cytoplasm c.36.1 Thiamin diphosphate-binding fold (THDP-binding)
View Download 0.214 0.097 cytoplasm c.78.1 Aspartate/ornithine carbamoyltransferase
View Download 0.213 0.097 cytoplasm d.68.7 R3H domain
View Download 0.211 0.097 cytoplasm d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.207 0.097 cytoplasm c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.206 0.097 cytoplasm c.1.12 Phosphoenolpyruvate/pyruvate domain
View Download 0.206 0.097 cytoplasm c.45.1 (Phosphotyrosine protein) phosphatases II
View Download 0.204 0.097 cytoplasm c.66.1 S-adenosyl-L-methionine-dependent methyltransferases

Predicted Domain #2
Region A:
Residues: [138-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFSVWCLNSG EILNLQRHTT VWQSVHIDFI LQTLRSFCYF NDSSLFYICE DHTEEKREEA  60
   61 QRLKYQELLK HFCEDRDMKD HIEMVTRSEI LIPKGCDSIG LIKTVDERFE PTEVKEQHFL 120
  121 ARYMDFIPTI DKIREDRKTT SGIDLDKLYP LEVFKVNIQE ELGKMFAKYR ENSRI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle