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View Structure Prediction Details

Protein: DYN3
Organism: Saccharomyces cerevisiae
Length: 312 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DYN3.

Description E-value Query
Range
Subject
Range
DYN3_YEAST - Cytoplasmic dynein intermediate light chain DYN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...
gi|151946007 - gi|151946007|gb|EDN64239.1| Light intermediate chain of dynein [Saccharomyces cerevisiae YJM789]
DYN3 - Dynein light intermediate chain (LIC); localizes with dynein, null mutant is defective in nuclear mi...
gi|190408525 - gi|190408525|gb|EDV11790.1| light intermediate chain of dynein [Saccharomyces cerevisiae RM11-1a]
gi|207342050 - gi|207342050|gb|EDZ69931.1| YMR299Cp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..312] [1..312]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNCNAWDKL LSQNESTINS TETATITAII YSPSSKTLHQ FINICFPEGS NSILDTTLIN  60
   61 YATIGWTNDL KENYSVDVYT LIRNTDDALD LLKPFLQEHS SKVRWLILLD WTLNDQKLWL 120
  121 NELSYAFNKI KQLNDDN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.890 0.097 cytoplasm c.23.1 CheY-like

Predicted Domain #2
Region A:
Residues: [138-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFSVWCLNSG EILNLQRHTT VWQSVHIDFI LQTLRSFCYF NDSSLFYICE DHTEEKREEA  60
   61 QRLKYQELLK HFCEDRDMKD HIEMVTRSEI LIPKGCDSIG LIKTVDERFE PTEVKEQHFL 120
  121 ARYMDFIPTI DKIREDRKTT SGIDLDKLYP LEVFKVNIQE ELGKMFAKYR ENSRI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle