| Protein: | PRP24 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 444 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP24.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [32..414] | [2..395] |
|
|
0.0 | [32..414] | [2..395] |
|
|
0.0 | [32..414] | [2..395] |
|
|
0.0 | [32..409] | [2..391] |
|
|
0.0 | [37..414] | [7..395] |
|
|
0.0 | [32..409] | [2..390] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MEYGHHARPD SKRPLDEGSP AAAGLTSKKA NEALTRNREL TTVLVKNLPK SYNQNKVYKY 60
61 FKHCGPIIHV DVADSLKKNF RFARIEFARY DGALAAITKT HKVVGQNEII VS
|
| Detection Method: |  |
| Confidence: | 54.69897 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.49612884560266 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| protein binding | 1.32954276279597 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| snoRNA binding | 0.642109402325711 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [113-201] |
1 11 21 31 41 51
| | | | | |
1 HLTECTLWMT NFPPSYTQRN IRDLLQDINV VALSIRLPSL RFNTSRRFAY IDVTSKEDAR 60
61 YCVEKLNGLK IEGYTLVTKV SNPLEKSKR
|
| Detection Method: | |
| Confidence: | 57.0 |
| Match: | 1l3kA_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [202-300] |
1 11 21 31 41 51
| | | | | |
1 TDSATLEGRE IMIRNLSTEL LDENLLRESF EGFGSIEKIN IPAGQKEHSF NNCCAFMVFE 60
61 NKDSAERALQ MNRSLLGNRE ISVSLADKKP FLERNEVKR
|
| Detection Method: | |
| Confidence: | 57.0 |
| Match: | 1l3kA_ |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [301-444] |
1 11 21 31 41 51
| | | | | |
1 LLASRNSKEL ETLICLFPLS DKVSPSLICQ FLQEEIHINE KDIRKILLVS DFNGAIIIFR 60
61 DSKFAAKMLM ILNGSQFQGK VIRSGTINDM KRYYNNQQNH SMKHVKPSCI NMMEKGPNLQ 120
121 VKKKIPDKQE QMSNDDFRKM FLGE
|
| Detection Method: | |
| Confidence: | 16.30103 |
| Match: | 1qm9A_ |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
