| Protein: | UBP8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 471 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..471] | [1..471] |
|
|
2.0E-85 | [4..468] | [91..588] |
|
|
3.0E-79 | [20..468] | [11..508] |
|
|
2.0E-76 | [129..466] | [38..376] |
|
|
3.0E-75 | [4..467] | [245..729] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 MSICPHIQQV FQNEKSKDGV LKTCNAARYI LNHSVPKEKF LNTMKCGTCH EINSGATFMC 60
61 LQCGFCGCWN HSHFLSHSKQ IGHIFGINSN NGLLFCFKCE DYIGNIDLIN DAILAKYWDD 120
121 VCTKTMVPSM
|
| Detection Method: |  |
| Confidence: | 21.638272 |
| Match: | PF02148 |
| Description: | Zn-finger in ubiquitin-hydrolases and other protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [131-179] |
1 11 21 31 41 51
| | | | | |
1 ERRDGLSGLI NMGSTCFMSS ILQCLIHNPY FIRHSMSQIH SNNCKVRSP
|
| Detection Method: | |
| Confidence: | 12.19382 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [180-398] |
1 11 21 31 41 51
| | | | | |
1 DKCFSCALDK IVHELYGALN TKQASSSSTS TNRQTGFIYL LTCAWKINQN LAGYSQQDAH 60
61 EFWQFIINQI HQSYVLDLPN AKEVSRANNK QCECIVHTVF EGSLESSIVC PGCQNNSKTT 120
121 IDPFLDLSLD IKDKKKLYEC LDSFHKKEQL KDFNYHCGEC NSTQDAIKQL GIHKLPSVLV 180
181 LQLKRFEHLL NGSNRKLDDF IEFPTYLNMK NYCSTKEKD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [399-471] |
1 11 21 31 41 51
| | | | | |
1 KHSENGKVPD IIYELIGIVS HKGTVNEGHY IAFCKISGGQ WFKFNDSMVS SISQEEVLKE 60
61 QAYLLFYTIR QVN
|
| Detection Method: | |
| Confidence: | 27.619789 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
