| Protein: | NUP53 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 475 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP53.
| Description | E-value | Query Range |
Subject Range |
|
|
563.0 | [0..1] | [475..1] |
|
|
262.0 | [0..5] | [475..7] |
|
|
246.0 | [0..70] | [475..44] |
|
|
210.0 | [0..12] | [475..9] |
|
|
198.0 | [0..198] | [374..119] |
|
|
139.0 | [0..76] | [475..41] |
|
|
86.0 | [0..200] | [425..239] |
|
Region A: Residues: [1-379] |
1 11 21 31 41 51
| | | | | |
1 MADLQKQENS SRFTNVSVIA PESQGQHEQQ KQQEQLEQQK QPTGLLKGLN GFPSAPQPLF 60
61 MEDPPSTVSG ELNDNPAWFN NPRKRAIPNS IIKRSNGQSL SPVRSDSADV PAFSNSNGFN 120
121 NVTFGSKKDP RILKNVSPND NNSANNNAHS SDLGTVVFDS NEAPPKTSLA DWQKEDGIFS 180
181 SKTDNIEDPN LSSNITFDGK PTATPSPFRP LEKTSRILNF FDKNTKTTPN TASSEASAGS 240
241 KEGASTNWDD HAIIIFGYPE TIANSIILHF ANFGEILEDF RVIKDFKKLN SKNMSKSPSL 300
301 TAQKYPIYTG DGWVKLTYKS ELSKSRALQE NGIIMNGTLI GCVSYSPAAL KQLASLKKSE 360
361 EIINNKTSSQ TSLSSKDLS
|
| Detection Method: |  |
| Confidence: | 12.52 |
| Match: | |
| Description: | No description for 1i3qA was found. |
|
Region A: Residues: [380-475] |
1 11 21 31 41 51
| | | | | |
1 NYRKTEGIFE KAKAKAVTSK VRNAEFKVSK NSTSFKNPRR LEIKDGRSLF LRNRGKIHSG 60
61 VLSSIESDLK KREQASKSKK SWLNRLNNWL FGWNDL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.656 | d.20.1 | UBC-like |
| View | Download | 0.548 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.548 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.529 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.429 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.424 | a.29.14 | Description not found. |
| View | Download | 0.386 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.373 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.356 | a.118.11 | Cytochrome c oxidase subunit E |
