YRC Public Data Repository - Protein Structure Prediction

Protein:	YMR124W
Organism:	Saccharomyces cerevisiae
Length:	943 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR124W.

Description	E-value	Query Range	Subject Range
gi\|49527698 - gi\|49527698\|emb\|CAG61347.1\| unnamed protein product [Candida glabrata] gi\|50291907, gi\|... - gi\|50291907\|ref\|XP_448386.1\| unnamed protein product [Candida glabrata], gi\|49527698\|emb\|CAG61347.1\|...	291.0	[0..1]	[942..1]
gi\|349192 - gi\|349192\|gb\|AAA35122.1\| unknown ORF [Saccharomyces cerevisiae]	275.0	[0..770]	[943..1]
gi\|49645004 - gi\|49645004\|emb\|CAG98576.1\| KLLA0F17545p [Kluyveromyces lactis] gi\|50311683, gi\|... - gi\|50311683\|ref\|XP_455868.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645004\|emb\|CAG9857...	205.0	[0..1]	[943..1]
gi\|44984745, gi\|... - gi\|45198735\|ref\|NP_985764.1\| AFR217Wp [Ashbya gossypii ATCC 10895], gi\|44984745\|gb\|AAS53588.1\| AFR21... gi\|44984745 - gi\|44984745\|gb\|AAS53588.1\| AFR217Wp [Ashbya gossypii ATCC 10895]	128.0	[0..743]	[942..862]
gi\|68486557, gi\|... - gi\|68486614\|ref\|XP_712801.1\| hypothetical protein CaO19.6871 [Candida albicans SC5314], gi\|68486557\|... orf19.14160, orf... - orf19.6871 CGDID:CAL0005863 Assembly 19, Contig19-10257 (7832, 11890) CDS, translated using codon ta...	79.0	[0..781]	[942..1050]
gi\|50424225, gi\|... - gi\|50424225\|ref\|XP_460699.1\| hypothetical protein DEHA0F08679g [Debaryomyces hansenii CBS767], gi\|49...	73.0	[0..749]	[943..876]
gi\|55963443, gi\|... - gi\|55963443\|emb\|CAI12027.1\| novel protein similar to vertebrate YLP motif containing 1 (YLPM1) [Dani...	59.0	[0..236]	[513..93]
gi\|110639865, gi... - gi\|110639865\|ref\|YP_680075.1\| hypothetical protein CHU_3499 [Cytophaga hutchinsonii ATCC 33406], gi\|...	51.0	[0..724]	[943..414]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAGLSTMAT RNGQSSARVK LRNNLLNNDI GNIDIRDETP ISRNGNDSNI NIQPSSVPQQ  60
   61 QQQQQQYYRN GMNEAPIQAP LQQRQIPMQN YSQQQRQQQQ YNFEYSNPHM NEIPLMQHNF 120
  121 TKPSLSNNRD NVNGKKASSF TQSSFSNFFK HKHQFGKSKK NTKGTGGGGD G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [172-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDDEVILDD SANSDLTFND IQTFGHKGGD KYGYGGDSTP IIPTLVTKDR GNMSNTEYRK  60
   61 YITNQRKTAM NAMAKQTKNG TLASLPPRAM SLQSFPNGNP LMQAPTPHPR

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	13.64
Match:
Description:	No description for 1ldvA was found.

Predicted Domain #3

Region A:
Residues: [282-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQPNKMVSAN YSRSNSLMSG PPGQFRQPQQ QRMLPMNNYN NHPGQFQNTP PVMPSGQQPP  60
   61 QQPRTLSLTN GPRYSPQNPR PFAGHQQISQ RQQQQQQQLQ LHPMSEGYRT MSLQSQNVPQ 120
  121 GFNPWSPNDN DRKAVSMKQP ISQSSISSKN NSAYSIPNVQ NNSLTTFSPS SPTD

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	10.16
Match:
Description:	No description for 1ivoA was found.

Predicted Domain #4

Region A:
Residues: [456-855]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATAMPNSTKQ GSSPLKKQVN IDQPIENKGK LNVLQLSTPQ QNELKEKERK LAEMEKSLRE  60
   61 REALVEEKEK ERAEKNTEAN EEEEISHESD DLNLRPASAL ETGLKDLKLE SESAVANRAS 120
  121 LSTFSSTFSD SPSKQRIINT RTGMYKLENS TDINEYVTAQ EFPSPGKYNS NSDNGEMNTT 180
  181 NEVDFDFNTS KRASLLQSIP ERDPKRNVSD ATIKRRESDG NGRRLSNVNI SMNQENINND 240
  241 TFLYKKNNRD GHLSAVSHMS SSSRRSFISN TLPLNIDSAS ESDNFVPHMD GSPSKTKSAP 300
  301 VSYDKDGMNA SEEDFSFDNT LAKPYEPLYA RRGDITSAGS TSGEDSSQPK MITISGEQLN 360
  361 LITENKELMN ELTLVSTELA ESIKRETELE ERIRLYETNN

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	10.16
Match:
Description:	No description for 1ivoA was found.

Predicted Domain #5

Region A:
Residues: [856-943]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPSFDDSSS VSFSDFEKEL RKKSSKIVQL IQQLNDERLK RFIAEEQLLL QENGTKPSSM  60
   61 ELVGRIENLN KLIDERDSEI EMLKGRLQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits