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View Structure Prediction Details

Protein: IRC21
Organism: Saccharomyces cerevisiae
Length: 201 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IRC21.

Description E-value Query
Range		 Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 1.0E-60 [2..199] [407..585]
NIA2_SOYBN - Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1
 1.0E-60 [2..199] [413..591]
NIA_EMENI - Nitrate reductase [NADPH] OS=Emericella nidulans GN=niaD PE=3 SV=1
NIA_EMENI - Nitrate reductase [NADPH] OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 19...
 3.0E-60 [2..200] [402..587]
NIA2_ARATH - Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1
 3.0E-60 [2..200] [438..617]
NIA_CUCMA - Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1
 5.0E-60 [2..200] [439..618]
gi|11119241 - gi|11119241|gb|AAG30576.1|AF314093_1 nitrate reductase [Ricinus communis]
 6.0E-60 [2..201] [430..610]
NIA_LOTJA - Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1
 6.0E-60 [2..200] [416..596]
gi|484422 - gi|484422|pir||JN0665 nitrate reductase (NADH) (EC 1.7.1.1) - petunia
NIA_PETHY - Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1
 8.0E-60 [2..200] [431..610]

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Predicted Domain #1
Region A:
Residues: [1-112] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDGMNRDV SNSKPNVRFA APQRLSVAHP AISSPLHMPM SKSSRKPLVR TKIRLDPGHS  60
   61 ALDWHSLTSN PANYYTKFVS LQLIQDLLDD PVFQKDNFKF SPSQLKNQLL VQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-201] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIPLYKIMPP LRINRKIVKK HCKGEDELWC VINGKVYDIS SYLKFHPGGT DILIKHRNSD  60
   61 DLITYFNKYH QWVNYEKLLQ VCFIGVVCE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.512579
Match: 1b5m__
Description: Cytochrome b5
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle