| Protein: | NUP116 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1113 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP116.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1113] | [1..1113] |
|
|
2.0E-88 | [225..1108] | [5..862] |
|
|
2.0E-81 | [64..1108] | [2..1026] |
|
|
4.0E-71 | [6..947] | [1406..2356] |
|
|
3.0E-68 | [13..978] | [1331..2310] |
|
|
1.0E-67 | [692..1108] | [9..406] |
|
Region A: Residues: [1-510] |
1 11 21 31 41 51
| | | | | |
1 MFGVSRGAFP SATTQPFGST GSTFGGQQQQ QQPVANTSAF GLSQQTNTTQ APAFGNFGNQ 60
61 TSNSPFGMSG STTANGTPFG QSQLTNNNAS GSIFGGMGNN TALSAGSASV VPNSTAGTSI 120
121 KPFTTFEEKD PTTGVINVFQ SITCMPEYRN FSFEELRFQD YQAGRKFGTS QNGTGTTFNN 180
181 PQGTTNTGFG IMGNNNSTTS ATTGGLFGQK PATGMFGTGT GSGGGFGSGA TNSTGLFGSS 240
241 TNLSGNSAFG ANKPATSGGL FGNTTNNPTN GTNNTGLFGQ QNSNTNGGLF GQQQNSFGAN 300
301 NVSNGGAFGQ VNRGAFPQQQ TQQGSGGIFG QSNANANGGA FGQQQGTGAL FGAKPASGGL 360
361 FGQSAGSKAF GMNTNPTGTT GGLFGQTNQQ QSGGGLFGQQ QNSNAGGLFG QNNQSQNQSG 420
421 LFGQQNSSNA FGQPQQQGGL FGSKPAGGLF GQQQGASTFA SGNAQNNSIF GQNNQQQQST 480
481 GGLFGQQNNQ SQSQPGGLFG QTNQNNNQPF
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [511-623] |
1 11 21 31 41 51
| | | | | |
1 GQNGLQQPQQ NNSLFGAKPT GFGNTSLFSN STTNQSNGIS GNNLQQQSGG LFQNKQQPAS 60
61 GGLFGSKPSN TVGGGLFGNN QVANQNNPAS TSGGLFGSKP ATGSLFGGTN STA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [624-1006] |
1 11 21 31 41 51
| | | | | |
1 PNASSGGIFG SNNASNTAAT TNSTGLFGNK PVGAGASTSA GGLFGNNNNS SLNNSNGSTG 60
61 LFGSNNTSQS TNAGGLFQNN TSTNTSGGGL FSQPSQSMAQ SQNALQQQQQ QQRLQIQNNN 120
121 PYGTNELFSK ATVTNTVSYP IQPSATKIKA DERKKASLTN AYKMIPKTLF TAKLKTNNSV 180
181 MDKAQIKVDP KLSISIDKKN NQIAISNQQE ENLDESILKA SELLFNPDKR SFKNLINNRK 240
241 MLIASEEKNN GSQNNDMNFK SKSEEQETIL GKPKMDEKET ANGGERMVLS SKNDGEDSAT 300
301 KHHSRNMDEE NKENVADLQK QEYSEDDKKA VFADVAEKDA SFINENYYIS PSLDTLSSYS 360
361 LLQLRKVPHL VVGHKSYGKI EFL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1007-1113] |
1 11 21 31 41 51
| | | | | |
1 EPVDLAGIPL TSLGGVIITF EPKTCIIYAN LPNRPKRGEG INVRARITCF NCYPVDKSTR 60
61 KPIKDPNHQL VKRHIERLKK NPNSKFESYD ADSGTYVFIV NHAAEQT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [683-781] |
1 11 21 31 41 51
| | | | | |
1 GLFGSNNTSQ STNAGGLFQN NTSTNTSGGG LFSQPSQSMA QSQNALQQQQ QQQRLQIQNN 60
61 NPYGTNELFS KATVTNTVSY PIQPSATKIK ADERKKASL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [782-967] |
1 11 21 31 41 51
| | | | | |
1 TNAYKMIPKT LFTAKLKTNN SVMDKAQIKV DPKLSISIDK KNNQIAISNQ QEENLDESIL 60
61 KASELLFNPD KRSFKNLINN RKMLIASEEK NNGSQNNDMN FKSKSEEQET ILGKPKMDEK 120
121 ETANGGERMV LSSKNDGEDS ATKHHSRNMD EENKENVADL QKQEYSEDDK KAVFADVAEK 180
181 DASFIN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [968-1113] |
1 11 21 31 41 51
| | | | | |
1 ENYYISPSLD TLSSYSLLQL RKVPHLVVGH KSYGKIEFLE PVDLAGIPLT SLGGVIITFE 60
61 PKTCIIYANL PNRPKRGEGI NVRARITCFN CYPVDKSTRK PIKDPNHQLV KRHIERLKKN 120
121 PNSKFESYDA DSGTYVFIVN HAAEQT
|
| Detection Method: | |
| Confidence: | 64.154902 |
| Match: | 2aivA |
| Description: | Multiple conformations in the ligand-binding site of the yeast nuclear pore targeting domain of NUP116P |
Matching Structure (courtesy of the PDB): |
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