| Protein: | HOF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 669 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOF1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-92 | [1..669] | [1..669] |
|
|
2.0E-71 | [4..666] | [17..669] |
|
|
1.0E-59 | [12..478] | [987..1484] |
|
|
2.0E-58 | [6..414] | [15..430] |
|
|
2.0E-58 | [2..665] | [2295..3007] |
|
|
5.0E-57 | [12..558] | [979..1553] |
|
|
3.0E-56 | [12..558] | [975..1549] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MSYSYEACFW DPNDNGVNIL LGHISQGIRS CDSMILFFKQ RSELEKDYAR RLGAITGKLD 60
61 KDIGTNMDYG KLNETFNVVL SVEKARAQSH SKQSEILFRQ IYTDTKAFAA NLQARYTTLS 120
121 GKIERLRMDK FNKKKGCEVL QKKLQDAQIR FRDLQLNENN MIGAKRVEHN KRELLKWESN 180
181 SQEYKVQLDV LKQEYKASQK FWIHEWAQLS CELQEMENAR ISFLQSKLQQ FATSSMETYI 240
241 L
|
| Detection Method: |  |
| Confidence: | 20.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 1.90790462185992 | bayes_pls_golite062009 |
| binding | 1.8819522899151 | bayes_pls_golite062009 |
| protein binding | 1.62071874398997 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.292726989351706 | bayes_pls_golite062009 |
| hydrolase activity | 0.147856264761915 | bayes_pls_golite062009 |
|
Region A: Residues: [242-498] |
1 11 21 31 41 51
| | | | | |
1 EQTKMDMLTN HLNSFTAADE ISTFSKENGT GRLKHKTSKG DMNSSANWAQ MSSISTTSKK 60
61 TESYMDNIRK LSSQLKETEN KRKLASIDKY EKPLPSPEVT MATQFRNSTP VIRNETKVVA 120
121 NPTLSLRSSP VQLQSNVDDS VLRQKPDKPR PIVGEEQLKP DEDSKNPDEK GLMVHKRNQS 180
181 LSSPSESSSS NPTDFSHIKK RQSMESMTTS VSSMANSIDD SQRFAKSWNS SNRKRKSMSH 240
241 LQVPSSASSR SDDGGRT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [499-594] |
1 11 21 31 41 51
| | | | | |
1 PNSAHNLNED DYNTRRDTST STILFKPPVA VRGTSRGHTH RQSMIMQDSS NPIEDALYEM 60
61 ERIQSSSKPG TKTGNIMDER GVVRDRGITV TLPIVT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.433 | 0.475 | cellular bud neck contractile ring | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.412 | 0.118 | cellular bud neck contractile ring | a.118.1 | ARM repeat |
| View | Download | 0.277 | 0.018 | cellular bud neck contractile ring | a.64.1 | Saposin |
| View | Download | 0.314 | 0.003 | cellular bud neck contractile ring | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.301 | N/A | N/A | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.273 | N/A | N/A | d.15.1 | Ubiquitin-like |
|
Region A: Residues: [595-669] |
1 11 21 31 41 51
| | | | | |
1 SEGFPVIEYA KAMYPLIGNE APGLANFHKG DYLLITEIVN KDWYKGEVYD NDRIDRNHRI 60
61 GLIPYNFIQL LHQGL
|
| Detection Method: | |
| Confidence: | 18.154902 |
| Match: | 1ark__ |
| Description: | SH3 domain from nebulin |
Matching Structure (courtesy of the PDB): |
|
