| Protein: | MRPL3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 390 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL3.
| Description | E-value | Query Range |
Subject Range |
|
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1.0E-98 | [1..390] | [1..390] |
|
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1.0E-57 | [91..376] | [11..263] |
|
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3.0E-56 | [117..370] | [8..222] |
|
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5.0E-56 | [115..370] | [6..226] |
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8.0E-56 | [115..370] | [6..226] |
|
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2.0E-55 | [113..369] | [1..226] |
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3.0E-55 | [113..369] | [1..226] |
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1.0E-54 | [113..370] | [4..227] |
|
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2.0E-54 | [117..374] | [9..231] |
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5.0E-54 | [113..373] | [16..244] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MGIVLKRAIA AGMKPFPNST WHWSRTIRPF SQHLSSTCFL QQSSRFTSKR YLHLSTLTQQ 60
61 EKRFLPESEL AKYKEYYQGL KSTVNEIPES VASKSPSLRT LHKRLQ
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.627 | 0.342 | translation | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.510 | 0.009 | structural constituent of ribosome | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.691 | 0.006 | structural constituent of ribosome | a.29.2 | Bromodomain |
| View | Download | 0.713 | 0.004 | structural constituent of ribosome | a.4.3 | ARID-like |
| View | Download | 0.502 | 0.003 | structural constituent of ribosome | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.499 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.495 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.434 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.428 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.424 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.381 | N/A | N/A | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.360 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.355 | N/A | N/A | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.349 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.346 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.339 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.318 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.314 | N/A | N/A | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.311 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.303 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.297 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.294 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.292 | N/A | N/A | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.286 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.286 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.285 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.284 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.279 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.278 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.276 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.276 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.274 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.270 | N/A | N/A | a.11.2 | Second domain of FERM |
| View | Download | 0.267 | N/A | N/A | a.141.1 | Frizzled cystein-rich domain |
| View | Download | 0.262 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.262 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.258 | N/A | N/A | b.34.8 | Fumarylacetoacetate hydrolase, FAH, N-terminal domain |
| View | Download | 0.254 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.249 | N/A | N/A | a.4.12 | TrpR-like |
| View | Download | 0.247 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.244 | N/A | N/A | d.189.1 | PX domain |
| View | Download | 0.242 | N/A | N/A | a.158.1 | F-box domain |
| View | Download | 0.240 | N/A | N/A | d.58.19 | Bacterial exopeptidase dimerisation domain |
| View | Download | 0.238 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.234 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.232 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.231 | N/A | N/A | d.65.1 | Hedgehog/DD-pepidase |
| View | Download | 0.225 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.223 | N/A | N/A | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.223 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.222 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.217 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.212 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.210 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.207 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.206 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
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Region A: Residues: [107-299] |
1 11 21 31 41 51
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1 LPNELTYSTL SRCLTCPSAK LPDKINNPTK GAAFVNTVPT NKYLDNHGLN IMGKNLLSYH 60
61 VTKSIIQKYP RLPTVVLNAA VNAYISEAVL AHIAKYWGIE VETTSVLSRY LKMEPFEFTL 120
121 GRLKFFNNSL NSKDGIELIT GKNFSETSAL AMSVRSIIAA IWAVTEQKDS QAVYRFIDDH 180
181 IMSRKLDITK MFQ
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| Detection Method: | |
| Confidence: | 22.221849 |
| Match: | 1jfzA_ |
| Description: | RNase III endonuclease catalytic domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural constituent of ribosome | 6.7575603459566 | bayes_pls_golite062009 |
| structural molecule activity | 6.24187874355454 | bayes_pls_golite062009 |
| RNA binding | 5.07736605479017 | bayes_pls_golite062009 |
| binding | 2.71832019206733 | bayes_pls_golite062009 |
| nucleic acid binding | 2.45216687077957 | bayes_pls_golite062009 |
| protein binding | 1.64057905923545 | bayes_pls_golite062009 |
| endoribonuclease activity | 1.62086478301433 | bayes_pls_golite062009 |
| double-stranded RNA binding | 1.46317494664076 | bayes_pls_golite062009 |
| DNA binding | 0.770826702436345 | bayes_pls_golite062009 |
| transcription regulator activity | 0.661231648959158 | bayes_pls_golite062009 |
| mRNA binding | 0.404665180963566 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.403469167264307 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.35650576095599 | bayes_pls_golite062009 |
| RNA helicase activity | 0.0112094156505713 | bayes_pls_golite062009 |
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Region A: Residues: [300-390] |
1 11 21 31 41 51
| | | | | |
1 FEQPTRELAM LCRREGLEKP VSKLVAESGR LSKSPVFIVH VFSGEETLGE GYGSSLKEAK 60
61 ARAATDALMK WYCYEPLAQQ EPVIDPGTVV V
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| Detection Method: | |
| Confidence: | 12.39794 |
| Match: | 1di2A_ |
| Description: | Double-stranded RNA-binding protein A, second dsRBD |
Matching Structure (courtesy of the PDB): |
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