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Protein Overview: gi|190408263

General Information:
Name(s) found: gi|190408263 [NCBI NR]
Description(s) found:
  • gi|190408263|gb|EDV11528.1| 60S ribosomal protein L3, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 390 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIVLKRAIA AGMKPFPNST WHWSRTIRPF SQHLSSTCFL QQSSRFTSKR YLHLSTLTQQ  60
   61 EKRFLPESEL AKYKEYYQGL KSTVNEIPES VASKSPSLRT LHKRLQLPNE LTYSTLSRCL 120
  121 TCPSAKLPDK INNPTKGAAF VNTVPTNKYL DNHGLNIMGK NLLSYHVTKS IIQKYPRLPT 180
  181 VVLNAAVNAY ISEAVLAHIA KYWGIEVETT SVLSRYLKME PFEFTLGRLK FFNNSLNSKD 240
  241 GIELITGKNF SETSALAMSV RSIIAAIWAV TEQKDSQAVY RFIDDHIMSR KLDITKMFQF 300
  301 EQPTRELAML CRREGLEKPV SKLVAESGRL SKSPVFIVHV FSGEETLGEG YGSSLKEAKA 360
  361 RAATDALMKW YCYEPLAQQE PVIDPGTVVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] MSA 1.037993 View MSA. No confident structure predictions are available.
    2 View Details [107..299] PSI-BLAST 22.221849 RNase III endonuclease catalytic domain
    3 View Details [300..390] PSI-BLAST 12.39794 Double-stranded RNA-binding protein A, second dsRBD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  6.7575603459566 bayes_pls_golite062009
  • structural molecule activity
    		•  6.24187874355454 bayes_pls_golite062009
  • RNA binding
    		•  5.07736605479017 bayes_pls_golite062009
  • binding
    		•  2.71832019206733 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.45216687077957 bayes_pls_golite062009
  • protein binding
    		•  1.64057905923545 bayes_pls_golite062009
  • endoribonuclease activity
    		•  1.62086478301433 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  1.46317494664076 bayes_pls_golite062009
  • DNA binding
    		•  0.770826702436345 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.661231648959158 bayes_pls_golite062009
  • mRNA binding
    		•  0.404665180963566 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.403469167264307 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.35650576095599 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.0112094156505713 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle