| Protein: | CLU1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1277 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLU1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1258] | [1..1258] |
|
|
0.0 | [2..1272] | [94..1383] |
|
|
0.0 | [158..1272] | [1..1082] |
|
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0.0 | [2..1208] | [5..1175] |
|
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0.0 | [9..1272] | [28..1114] |
|
|
0.0 | [3..1140] | [15..1198] |
|
Region A: Residues: [1-716] |
1 11 21 31 41 51
| | | | | |
1 MSEKKEEVKN ATVKVTVKLP KEDNHSHNTK HLKKTQSSKN NDISFEIGKE SKIQTVLDVL 60
61 AMIPSSKYLT NVGLKTIEGD SQLSDEMSIK EIVGEKSELK LQLILKPYSA REALKHVITV 120
121 RDFIGFAQET SDGLSEFAIS TGSSFSSLPL GPIKERSKQE EKDEKSDPEE KKNTFKDVTD 180
181 EEKLKFNEMV HEVFSSFKNS SINKLLTSES NIITPCVRSL SFAPYNPVPP FYRSKGHLFY 240
241 LQIVTLEGES FYITAIPSGF YVNKSNSTKF DPSPKENTDE NAHSSLIYYS LFDLIASRSK 300
301 KFISHVQAFE KKLSALDSTS YVRPSNTFLH KPWFVSSLPP NNPDYLRLQT AALDTTPERN 360
361 FNDEFQAIKD LTTSTLQDRI EMERLFSKVV HEFSVTAASG AMSIFYSDFV AMNPESPTRD 420
421 QIFLKDNIFY SYVSDVSGNY EGKGGDEAAI AASNQDLKTI NILNRLHMHE VRYLLTTVVE 480
481 FAGRRILAQT PVPGLLATMG NKIVKDANTG EEVTEDFVND INVKYGLDEG LGKIVYDADF 540
541 DSVLEKKFVK AFHLKKHKVN GTELAFSSQS KGIVGFDKRR YILDLANTYP LDINFARQNF 600
601 DNIEETGNRY PHRQTLLRPE LVEKWWNNKV EKEGVEFEKA YEENLFSYNP DAYQVEGIED 660
661 ANVDEMSNYL QKEVIPSVIQ DYLSGNLSTP YNGEHLADTL HKNGINMRYL GKIIEL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [717-802] |
1 11 21 31 41 51
| | | | | |
1 SQKELDSQIV HYEQNLKAVE QDNKEYEDWE KSYLQKIENM IKERQAKINK LVQEGKEVPK 60
61 ELTEDLKLND EEIKKPTDGK PVVVAY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.58148987937399 | bayes_pls_golite062009 |
| protein binding | 0.856276659140234 | bayes_pls_golite062009 |
|
Region A: Residues: [803-991] |
1 11 21 31 41 51
| | | | | |
1 DELVPLIKIS ELEIVSRSLK HVLKDLSKDV PVFLVPSLVA YVFNMLVGIN YNADPKPEPV 60
61 DEFYPVNKCS FAKLTRSELL EAVSKQAFLR FRHQLPSNWI EAYMENPFTL IRSVSYKFGI 120
121 QLLNKEYFFT REQLESYKQS LDKKIRNKFV EPPTTFSLSD LTIIPRVKFS EYTSSVSEEF 180
181 WAQGASMIN
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [992-1076] |
1 11 21 31 41 51
| | | | | |
1 EDKQSALTLL AQSITVLEDV NNILHPAVAE KYLSLSAIYN KLALYPEAIA FCRKACTIYE 60
61 RVSGIDSFEM MRALTNLAIL EFSNE
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1077-1154] |
1 11 21 31 41 51
| | | | | |
1 SPYNATVVYN RLAEILKVYE LPKIHHPAPT SIFNHLEQLA LGVQDTKLAI EVLGQLSSYV 60
61 VELEGKDSLA YGYTESRL
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07985546140154 | bayes_pls_golite062009 |
| protein binding | 1.6279032205159 | bayes_pls_golite062009 |
| transcription regulator activity | 0.921062221092247 | bayes_pls_golite062009 |
| nucleic acid binding | 0.75712113503301 | bayes_pls_golite062009 |
| DNA binding | 0.665813461397509 | bayes_pls_golite062009 |
|
Region A: Residues: [1155-1277] |
1 11 21 31 41 51
| | | | | |
1 GNLFAALKDF HRALEHITVT QGIFTKQLGM NHTHSAQSRQ WVNGLSSLIM DLKQKKQLAQ 60
61 DQMSTTGSNS AGHKKTNHRQ KKDDVKPELA NKSVDELLTF IEGDSSNSKS KNKTNNKKKH 120
121 GKK
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
