| Protein: | RPL6A |
| Organism: | Saccharomyces cerevisiae |
| Length: | 176 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL6A.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-72 | [1..176] | [115..296] |
|
|
2.0E-70 | [1..176] | [116..297] |
|
|
2.0E-70 | [1..176] | [107..288] |
|
|
1.0E-66 | [1..176] | [79..260] |
|
|
1.0E-66 | [1..176] | [107..288] |
|
|
6.0E-60 | [1..176] | [47..227] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MSAQKAPKWY PSEDVAALKK TRKAARPQKL RASLVPGTVL ILLAGRFRGK RVVYLKHLED 60
61 NTLLIS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| structural constituent of ribosome | 9.33175622373475 | bayes_pls_golite062009 |
| structural molecule activity | 8.78104488316498 | bayes_pls_golite062009 |
| binding | 1.53082494948413 | bayes_pls_golite062009 |
| RNA binding | 1.34286989242843 | bayes_pls_golite062009 |
| nucleic acid binding | 1.34250569976274 | bayes_pls_golite062009 |
| transcription regulator activity | 1.24801565562229 | bayes_pls_golite062009 |
| DNA binding | 0.817602006068725 | bayes_pls_golite062009 |
| protein binding | 0.431966441580751 | bayes_pls_golite062009 |
| transcription factor activity | 0.151888933180377 | bayes_pls_golite062009 |
| translation regulator activity | 0.084754562593104 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.0564075582229911 | bayes_pls_golite062009 |
|
Region A: Residues: [67-176] |
1 11 21 31 41 51
| | | | | |
1 GPFKVNGVPL RRVNARYVIA TSTKVSVEGV NVEKFNVEYF AKEKLTKKEK KEANLFPEQQ 60
61 NKEIKAERVE DQKVVDKALI AEIKKTPLLK QYLSASFSLK NGDKPHMLKF
|
| Detection Method: | |
| Confidence: | 70.657577 |
| Match: | PF01159 |
| Description: | Ribosomal protein L6e |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
