| Protein: | RPL6A |
| Organism: | Saccharomyces cerevisiae |
| Length: | 176 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL6A.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-72 | [1..176] | [115..296] |
|
|
2.0E-70 | [1..176] | [116..297] |
|
|
2.0E-70 | [1..176] | [107..288] |
|
|
1.0E-66 | [1..176] | [79..260] |
|
|
1.0E-66 | [1..176] | [107..288] |
|
|
6.0E-60 | [1..176] | [47..227] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MSAQKAPKWY PSEDVAALKK TRKAARPQKL RASLVPGTVL ILLAGRFRGK RVVYLKHLED 60
61 NTLLIS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.542 | 0.128 | ribosomal large subunit assembly | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.573 | 0.099 | ribosomal large subunit assembly | b.122.1 | PUA domain-like |
| View | Download | 0.542 | 0.077 | ribosomal large subunit assembly | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.554 | 0.070 | ribosomal large subunit assembly | g.41.3 | Zinc beta-ribbon |
| View | Download | 0.572 | N/A | N/A | b.122.1 | PUA domain-like |
| View | Download | 0.529 | N/A | N/A | d.17.1 | Cystatin/monellin |
| View | Download | 0.516 | N/A | N/A | d.17.5 | Uracil-DNA glycosylase inhibitor protein |
| View | Download | 0.508 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.471 | N/A | N/A | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.469 | N/A | N/A | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.457 | N/A | N/A | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.453 | N/A | N/A | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.444 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.405 | N/A | N/A | d.175.1 | Penicillin binding protein dimerisation domain |
| View | Download | 0.355 | N/A | N/A | b.84.1 | Single hybrid motif |
| View | Download | 0.355 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.346 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.343 | N/A | N/A | d.1.1 | Microbial ribonucleases |
| View | Download | 0.335 | N/A | N/A | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.331 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.321 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.316 | N/A | N/A | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.301 | N/A | N/A | b.34.2 | SH3-domain |
| View | Download | 0.290 | N/A | N/A | g.3.7 | Scorpion toxin-like |
| View | Download | 0.287 | N/A | N/A | b.40.6 | MOP-like |
| View | Download | 0.280 | N/A | N/A | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.277 | N/A | N/A | b.36.1 | PDZ domain-like |
| View | Download | 0.263 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.254 | N/A | N/A | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.244 | N/A | N/A | g.16.1 | Trefoil |
| View | Download | 0.221 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.206 | N/A | N/A | d.200.1 | Integrin beta tail domain |
| Term | Confidence | Notes |
| structural constituent of ribosome | 9.33175622373475 | bayes_pls_golite062009 |
| structural molecule activity | 8.78104488316498 | bayes_pls_golite062009 |
| binding | 1.53082494948413 | bayes_pls_golite062009 |
| RNA binding | 1.34286989242843 | bayes_pls_golite062009 |
| nucleic acid binding | 1.34250569976274 | bayes_pls_golite062009 |
| transcription regulator activity | 1.24801565562229 | bayes_pls_golite062009 |
| DNA binding | 0.817602006068725 | bayes_pls_golite062009 |
| protein binding | 0.431966441580751 | bayes_pls_golite062009 |
| transcription factor activity | 0.151888933180377 | bayes_pls_golite062009 |
| translation regulator activity | 0.084754562593104 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.0564075582229911 | bayes_pls_golite062009 |
|
Region A: Residues: [67-176] |
1 11 21 31 41 51
| | | | | |
1 GPFKVNGVPL RRVNARYVIA TSTKVSVEGV NVEKFNVEYF AKEKLTKKEK KEANLFPEQQ 60
61 NKEIKAERVE DQKVVDKALI AEIKKTPLLK QYLSASFSLK NGDKPHMLKF
|
| Detection Method: | |
| Confidence: | 70.657577 |
| Match: | PF01159 |
| Description: | Ribosomal protein L6e |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
