| Protein: | RAD52 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 504 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD52.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [49..487] | [9..432] |
|
|
0.0 | [32..493] | [10..498] |
|
|
0.0 | [47..396] | [13..359] |
|
|
0.0 | [46..396] | [21..388] |
|
|
1.0E-98 | [27..275] | [20..261] |
|
|
1.0E-97 | [26..275] | [19..261] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MAFLSYFATE NQQMQTRRLP RTAEGSGGFG VLLMNEIMDM DEKKPVFGNH SEDIQTKLDK 60
61 KLGPEYISKR VGFGTSRIAY IEGWRVINLA NQIFGYNGWS TEVKSVVIDF LDERQGKFSI 120
121 GCTAIVRVTL TSGTYREDIG YGTVE
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.413 | 0.083 | DNA strand annealing activity | d.17.4 | NTF2-like |
| View | Download | 0.394 | 0.059 | DNA strand annealing activity | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.393 | 0.039 | DNA strand annealing activity | d.185.1 | LuxS/MPP-like metallohydrolase |
| View | Download | 0.433 | 0.011 | DNA strand annealing activity | d.155.1 | Pyruvoyl-dependent histidine and arginine decarboxylases |
| View | Download | 0.491 | N/A | N/A | a.84.1 | Scaffolding protein gpD of bacteriophage procapsid |
| View | Download | 0.376 | N/A | N/A | b.1.17 | Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |
| View | Download | 0.369 | N/A | N/A | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.363 | N/A | N/A | d.24.1 | Pili subunits |
| View | Download | 0.363 | N/A | N/A | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.349 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.311 | N/A | N/A | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.306 | N/A | N/A | d.58.48 | MTH1187-like |
| View | Download | 0.281 | N/A | N/A | d.109.2 | C-terminal, gelsolin-like domain of Sec23/24 |
| View | Download | 0.275 | N/A | N/A | d.162.1 | LDH C-terminal domain-like |
| View | Download | 0.268 | N/A | N/A | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.209 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.203 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.202 | N/A | N/A | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
|
Region A: Residues: [146-504] |
1 11 21 31 41 51
| | | | | |
1 NERRKPAAFE RAKKSAVTDA LKRSLRGFGN ALGNCLYDKD FLAKIDKVKF DPPDFDENNL 60
61 FRPTDEISES SRTNTLHENQ EQQQYPNKRR QLTKVTNTNP DSTKNLVKIE NTVSRGTPMM 120
121 AAPAEANSKN SSNKDTDLKS LDASKQDQDD LLDDSLMFSD DFQDDDLINM GNTNSNVLTT 180
181 EKDPVVAKQS PTASSNPEAE QITFVTAKAA TSVQNERYIG EESIFDPKYQ AQSIRHTVDQ 240
241 TTSKHIPASV LKDKTMTTAR DSVYEKFAPK GKQLSMKNND KELGPHMLEG AGNQVPRETT 300
301 PIKTNATAFP PAAAPRFAPP SKVVHPNGNG AVPAVPQQRS TRREVGRPKI NPLHARKPT
|
| Detection Method: | |
| Confidence: | 13.36 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
