YRC Public Data Repository - Protein Structure Prediction

Protein:	RPN13
Organism:	Saccharomyces cerevisiae
Length:	156 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPN13.

Description	E-value	Query Range	Subject Range
RPN13 - Subunit of the 19S regulatory particle of the 26S proteasome lid; acts as a ubiquitin receptor for t... RPN13_YEAST - 26S proteasome regulatory subunit RPN13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... gi\|151940938 - gi\|151940938\|gb\|EDN59320.1\| regulatory particle non-ATPase [Saccharomyces cerevisiae YJM789]	7.0E-52	[1..156]	[1..156]
ADRM1_CHICK - Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1	2.0E-46	[2..132]	[18..131]
gi\|148224798, gi... - gi\|6174842\|dbj\|BAA86033.1\| oocyte membrane protein [Xenopus laevis], gi\|148224798\|ref\|NP_001081367.1...	1.0E-45	[2..132]	[17..130]
gi\|124000251, gi... - gi\|61363711\|gb\|AAX42432.1\| adhesion regulating molecule 1 [synthetic construct], gi\|124000251\|gb\|ABM... ADRM1 - adhesion regulating molecule 1	2.0E-45	[2..132]	[18..131]
ADRM1_MOUSE - Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2	3.0E-45	[2..132]	[18..131]
ADRM1_RAT, ADRM_RAT - (Q9JMB5) Adhesion regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110), Adhe...	9.0E-45	[2..132]	[18..131]
CG6789-PA - This gene is referred to in FlyBase by the symbol Dmel\CG6789 (CG6789, FBgn0029745). It is a protein... gi\|220957910, gi... - gi\|220957910\|gb\|ACL91498.1\| CG6789-PA [synthetic construct], gi\|220950914\|gb\|ACL88000.1\| CG6789-PA [...	1.0E-42	[2..151]	[4..137]
SPCC16A11.16c - ARM1 family ADRM1_SCHPO - Probable proteasomal ubiquitin receptor ADRM1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATC...	6.0E-42	[7..143]	[20..157]
gi\|27363336, gi\|... - gi\|27363336\|gb\|AAO11587.1\| At2g26590/T9J22.26 [Arabidopsis thaliana], gi\|13926227\|gb\|AAK49589.1\|AF37...	6.0E-38	[3..139]	[10..128]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSSTVIKF RAGVCEYNED SRLCTPIPVQ GEIEIKPNEE EELGFWDFEW RPTEKPVGRE  60
   61 LDPISLILIP GETMWVPIKS SKSGRIFALV FSSNERYFFW LQEKNSGNLP LNELSAKDKE 120
  121 IYNKMIGVLN NSSESDEEES NDEKQKAQDV DVSMQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.56405396848915	bayes_pls_golite062009
binding	1.92972815841164	bayes_pls_golite062009
protein binding	1.26119545864643	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: