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View Structure Prediction Details

Protein: RPN13
Organism: Saccharomyces cerevisiae
Length: 156 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPN13.

Description E-value Query
Range
Subject
Range
RPN13 - Subunit of the 19S regulatory particle of the 26S proteasome lid; acts as a ubiquitin receptor for t...
RPN13_YEAST - 26S proteasome regulatory subunit RPN13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
gi|151940938 - gi|151940938|gb|EDN59320.1| regulatory particle non-ATPase [Saccharomyces cerevisiae YJM789]
7.0E-52 [1..156] [1..156]
ADRM1_CHICK - Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1
2.0E-46 [2..132] [18..131]
gi|148224798, gi... - gi|6174842|dbj|BAA86033.1| oocyte membrane protein [Xenopus laevis], gi|148224798|ref|NP_001081367.1...
1.0E-45 [2..132] [17..130]
gi|124000251, gi... - gi|61363711|gb|AAX42432.1| adhesion regulating molecule 1 [synthetic construct], gi|124000251|gb|ABM...
ADRM1 - adhesion regulating molecule 1
2.0E-45 [2..132] [18..131]
ADRM1_MOUSE - Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2
3.0E-45 [2..132] [18..131]
ADRM1_RAT, ADRM_RAT - (Q9JMB5) Adhesion regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110), Adhe...
9.0E-45 [2..132] [18..131]
CG6789-PA - This gene is referred to in FlyBase by the symbol Dmel\CG6789 (CG6789, FBgn0029745). It is a protein...
gi|220957910, gi... - gi|220957910|gb|ACL91498.1| CG6789-PA [synthetic construct], gi|220950914|gb|ACL88000.1| CG6789-PA [...
1.0E-42 [2..151] [4..137]
SPCC16A11.16c - ARM1 family
ADRM1_SCHPO - Probable proteasomal ubiquitin receptor ADRM1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATC...
6.0E-42 [7..143] [20..157]
gi|27363336, gi|... - gi|27363336|gb|AAO11587.1| At2g26590/T9J22.26 [Arabidopsis thaliana], gi|13926227|gb|AAK49589.1|AF37...
6.0E-38 [3..139] [10..128]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSSTVIKF RAGVCEYNED SRLCTPIPVQ GEIEIKPNEE EELGFWDFEW RPTEKPVGRE  60
   61 LDPISLILIP GETMWVPIKS SKSGRIFALV FSSNERYFFW LQEKNSGNLP LNELSAKDKE 120
  121 IYNKMIGVLN NSSESDEEES NDEKQKAQDV DVSMQD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
hydrolase activity 2.56405396848915 bayes_pls_golite062009
binding 1.92972815841164 bayes_pls_golite062009
protein binding 1.26119545864643 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle