| Protein: | VPS33 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 691 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS33.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..691] | [1..691] |
|
|
0.0 | [31..691] | [2..644] |
|
|
0.0 | [52..578] | [22..537] |
|
|
0.0 | [39..578] | [12..537] |
|
|
0.0 | [52..578] | [22..537] |
|
|
0.0 | [42..577] | [7..541] |
|
Region A: Residues: [1-240] |
1 11 21 31 41 51
| | | | | |
1 MNRFWNTKKF SLTNADGLCA TLNEISQNDE VLVVQPSVLP VLNSLLTFQD LTQSTPVRKI 60
61 TLLDDQLSDD LPSALGSVPQ MDLIFLIDVR TSLRLPPQLL DAAQKHNLSS LHIIYCRWKP 120
121 SFQNTLEDTE QWQKDGFDLN SKKTHFPNVI ESQLKELSNE YTLYPWDLLP FPQIDENVLL 180
181 THSLYNMENV NMYYPNLRSL QSATESILVD DMVNSLQSLI FETNSIITNV VSIGNLSKRC 240
241
|
| Detection Method: |  |
| Confidence: | 166.9897 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 3.42828022195984 | bayes_pls_golite062009 |
| binding | 2.63582271791607 | bayes_pls_golite062009 |
| syntaxin binding | 2.11416428645287 | bayes_pls_golite062009 |
| protein binding | 1.92978960054246 | bayes_pls_golite062009 |
|
Region A: Residues: [241-396] |
1 11 21 31 41 51
| | | | | |
1 SHLLKKRIDE HQTENDLFIK GTLYGERTNC GLEMDLIILE RNTDPITPLL TQLTYAGILD 60
61 DLYEFNSGIK IKEKDMNFNY KEDKIWNDLK FLNFGSIGPQ LNKLAKELQT QYDTRHKAES 120
121 VHEIKEFVDS LGSLQQRQAF LKNHTTLSSD VLKVVE
|
| Detection Method: | |
| Confidence: | 166.9897 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [397-609] |
1 11 21 31 41 51
| | | | | |
1 TEEYGSFNKI LELELEILMG NTLNNDIEDI ILELQYQYEV DQKKILRLIC LLSLCKNSLR 60
61 EKDYEYLRTF MIDSWGIEKC FQLESLAELG FFTSKTGKTD LHITTSKSTR LQKEYRYISQ 120
121 WFNTVPIEDE HAADKITNEN DDFSEATFAY SGVVPLTMRL VQMLYDRSIL FHNYSSQQPF 180
181 ILSREPRVSQ TEDLIEQLYG DSHAIEESIW VPG
|
| Detection Method: | |
| Confidence: | 166.9897 |
| Match: | 1fvfA_ |
| Description: | Neuronal Sec1, NSec1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [610-691] |
1 11 21 31 41 51
| | | | | |
1 TITKKINASI KSNNRRSIDG SNGTFHAAED IALVVFLGGV TMGEIAIMKH LQKILGKKGI 60
61 NKRFIIIADG LINGTRIMNS IS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.832 | 0.023 | fungal-type vacuole membrane | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
