YRC Public Data Repository - Protein Structure Prediction

Protein:	MID2
Organism:	Saccharomyces cerevisiae
Length:	376 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MID2.

Description	E-value	Query Range	Subject Range
gi\|4808166 - gi\|4808166\|emb\|CAB42797.1\| largest subunit of the RNA polymerase II complex [Drosophila pseudoobscur...	171.0	[0..12]	[252..1509]
shot-PB - The gene short stop is referred to in FlyBase by the symbol Dmel\shot (CG18076, FBgn0013733). It is ...	167.0	[0..1]	[279..5127]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	165.0	[0..5]	[246..1488]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	163.0	[0..1]	[236..1459]
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1	160.0	[0..4]	[305..817]
gi\|9587193, gi\|9... - gi\|9587199\|gb\|AAF89203.1\|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura], gi\|95...	154.0	[0..12]	[252..1587]
gi\|70869911 - gi\|70869911\|gb\|EAN84377.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71407532 - gi\|71407532\|ref\|XP_806228.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	150.0	[0..4]	[308..726]

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Predicted Domain #1

Region A:
Residues: [1-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFTTKNSF RLLLLILSCI STIRAQFFVQ SSSSNSSAVS TARSSVSRVS SSSSILSSSM  60
   61 VSSSSADSSS LTSSTSSRSL VSHTSSSTSI ASISFTSFSF SSDSSTSSSS SASSDSSSSS 120
  121 SFSISSTSAT SESSTSSTQT STSSSSSLSS TPSSSSSPST ITSAPSTSST PSTTAYNQGS 180
  181 TITSIINGKT ILSNHYTTVT YTPSATADSS NKSKSSGLSK KNRNIVIGCV VGIGVPLILV 240
  241 ILALIYMFCI QSSRTDFIDS DGKVVTAYRA NKFTKWWYML LGKKVSDEYH SDSPLGGSAS 300
  301 SAGGLDLDEA DDVMEQSSLF DVRI

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	14.79
Match:
Description:	No description for 1m2vB was found.

Predicted Domain #2

Region A:
Residues: [325-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDSDSVLPNA NTADHNNTNS GGEPINSSVA SNDIIEEKFY DEQGNELSPR NY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits