| Protein: | DBP9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 594 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [3..412] | [163..579] |
|
|
0.0 | [3..425] | [154..582] |
|
|
0.0 | [3..442] | [259..695] |
|
|
0.0 | [3..412] | [163..579] |
|
|
0.0 | [3..412] | [204..620] |
|
|
0.0 | [3..410] | [137..547] |
|
Region A: Residues: [1-242] |
1 11 21 31 41 51
| | | | | |
1 MSYEKKSVEG AYIDDSTTFE AFHLDSRLLQ AIKNIGFQYP TLIQSHAIPL ALQQKRDIIA 60
61 KAATGSGKTL AYLIPVIETI LEYKKTIDNG EENGTLGIIL VPTRELAQQV YNVLEKLVLY 120
121 CSKDIRTLNI SSDMSDSVLS TLLMDQPEII VGTPGKLLDL LQTKINSISL NELKFLVVDE 180
181 VDLVLTFGYQ DDLNKIGEYL PLKKNLQTFL MSATLNDDIQ ALKQKFCRSP AILKFNDEEI 240
241 NK
|
| Detection Method: |  |
| Confidence: | 394.9897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [243-390] |
1 11 21 31 41 51
| | | | | |
1 NQNKLLQYYV KVSEFDKFLL CYVIFKLNLI KGKTLIFVNN IDRGYRLKLV MEQFGIKSCI 60
61 LNSELPVNSR QHIVDQFNKN VYQLLIATDD TEYIKEEDDE IEEGHNTENQ EEKSLEGEPE 120
121 NDKKPSKKKK VQVKKDKEYG VSRGVDFK
|
| Detection Method: | |
| Confidence: | 394.9897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [391-486] |
1 11 21 31 41 51
| | | | | |
1 NVACVLNFDL PTTAKSYVHR VGRTARGGKT GTAISFVVPL KEFGKHKPSM LQTAKKDERI 60
61 LSRIIKQQSK LGLELQPYKF DQKQVEAFRY RMEDGF
|
| Detection Method: | |
| Confidence: | 9.154902 |
| Match: | 1d2mA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [487-594] |
1 11 21 31 41 51
| | | | | |
1 RAVTQVAIRE ARVKELKQEL LASEKLKRHF EENPKELQSL RHDKELHPAR VQQHLKRVPD 60
61 YLLPESARGN GTKVKFVPFH NAKKRHSHKK GRVSKPKNGK VDPLKNFK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.334 | 0.623 | ribosomal large subunit assembly | c.47.1 | Thioredoxin-like |
| View | Download | 0.291 | 0.103 | ribosomal large subunit assembly | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.309 | N/A | N/A | d.58.27 | Translational regulator protein regA |
| View | Download | 0.285 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.251 | N/A | N/A | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.238 | N/A | N/A | d.164.1 | SMAD MH1 domain |
| View | Download | 0.225 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.202 | N/A | N/A | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
