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View Structure Prediction Details

Protein: YLR271W
Organism: Saccharomyces cerevisiae
Length: 274 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR271W.

Description E-value Query
Range
Subject
Range
YL271_YEAST - Uncharacterized protein YLR271W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR271W ...
YLR271W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...
1.0E-66 [1..274] [1..274]
CE13175 - status:Confirmed UniProt:Q22178 protein_id:CAB01582.1
8.0E-47 [3..273] [35..284]
gi|220944386, gi... - gi|220954340|gb|ACL89713.1| CG10053-PA [synthetic construct], gi|220944386|gb|ACL84736.1| CG10053-PA...
FBpp0308784, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG10053 (CG10053, FBgn0037490). It is a prote...
6.0E-41 [2..273] [30..266]
SPAC1486.03c - RNA-binding splicing factor
YKR3_SCHPO - G-patch domain-containing protein C1486.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...
9.0E-35 [2..243] [73..343]
gi|109451064, gi... - gi|61362057|gb|AAX42152.1| tuftelin interacting protein 11 [synthetic construct], gi|168275772|dbj|B...
TFIP11 - tuftelin interacting protein 11
HGNC:17165|MIM:6... - interacting protein 11
4.0E-32 [1..243] [95..347]
STIP1_ARATH - Septin and tuftelin-interacting protein 1 homolog 1 OS=Arabidopsis thaliana GN=STIPL1 PE=2 SV=1
4.0E-31 [4..234] [160..368]
gi|17389251 - gi|17389251|gb|AAH17682.1| Tuftelin interacting protein 11 [Mus musculus]
2.0E-28 [2..243] [97..348]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESKTKRKE DRIDLKNTPP QKKSKRDSTN DETARTSLRS IMPRGYKMME NMGYKEGETL  60
   61 GSNESALKEP IKVEINTKRR GIRAEKPDPS TMNDMQMSEQ RFIKRESEMK NNKRLKKIWY 120
  121 RIQKVAFEMM GDSDLYNPG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 16.013228
Match: PF01585
Description: G-patch domain

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.583 N/A N/A a.24.14 FAT domain of focal adhesion kinase
View Download 0.523 N/A N/A c.16.1 Lumazine synthase
View Download 0.411 N/A N/A a.1.1 Globin-like
View Download 0.408 N/A N/A f.14.1 Voltage-gated potassium channels
View Download 0.321 N/A N/A d.110.2 GAF domain-like

Predicted Domain #2
Region A:
Residues: [140-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDPRDFNVLW RSYVMQLNEE VAKNDLNNHS NNDNEDKNNM IPMVNESLEA SPAIKGEKFG  60
   61 RPSTLIDCDT SIIGSRITKD TELAELEELS IEKRITKLNI FLRSEKYYCF FCGIKYKDEG 120
  121 DLYEHCPGVN EDDHK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.253 0.549 cytoplasm c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.267 0.288 cytoplasm c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.210 0.054 cytoplasm c.61.1 PRTase-like
View Download 0.265 0.017 cytoplasm c.10.1 RNI-like
View Download 0.267 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.265 N/A N/A c.10.1 RNI-like
View Download 0.253 N/A N/A c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.219 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.210 N/A N/A c.61.1 PRTase-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle