YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR271W
Organism:	Saccharomyces cerevisiae
Length:	274 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR271W.

Description	E-value	Query Range	Subject Range
YL271_YEAST - Uncharacterized protein YLR271W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR271W ... YLR271W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	1.0E-66	[1..274]	[1..274]
CE13175 - status:Confirmed UniProt:Q22178 protein_id:CAB01582.1	8.0E-47	[3..273]	[35..284]
gi\|220944386, gi... - gi\|220954340\|gb\|ACL89713.1\| CG10053-PA [synthetic construct], gi\|220944386\|gb\|ACL84736.1\| CG10053-PA... FBpp0308784, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG10053 (CG10053, FBgn0037490). It is a prote...	6.0E-41	[2..273]	[30..266]
SPAC1486.03c - RNA-binding splicing factor YKR3_SCHPO - G-patch domain-containing protein C1486.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...	9.0E-35	[2..243]	[73..343]
gi\|109451064, gi... - gi\|61362057\|gb\|AAX42152.1\| tuftelin interacting protein 11 [synthetic construct], gi\|168275772\|dbj\|B... TFIP11 - tuftelin interacting protein 11 HGNC:17165\|MIM:6... - interacting protein 11	4.0E-32	[1..243]	[95..347]
STIP1_ARATH - Septin and tuftelin-interacting protein 1 homolog 1 OS=Arabidopsis thaliana GN=STIPL1 PE=2 SV=1	4.0E-31	[4..234]	[160..368]
gi\|17389251 - gi\|17389251\|gb\|AAH17682.1\| Tuftelin interacting protein 11 [Mus musculus]	2.0E-28	[2..243]	[97..348]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESKTKRKE DRIDLKNTPP QKKSKRDSTN DETARTSLRS IMPRGYKMME NMGYKEGETL  60
   61 GSNESALKEP IKVEINTKRR GIRAEKPDPS TMNDMQMSEQ RFIKRESEMK NNKRLKKIWY 120
  121 RIQKVAFEMM GDSDLYNPG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.013228
Match:	PF01585
Description:	G-patch domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDPRDFNVLW RSYVMQLNEE VAKNDLNNHS NNDNEDKNNM IPMVNESLEA SPAIKGEKFG  60
   61 RPSTLIDCDT SIIGSRITKD TELAELEELS IEKRITKLNI FLRSEKYYCF FCGIKYKDEG 120
  121 DLYEHCPGVN EDDHK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits