| Protein: | PEP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 918 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEP3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..918] | [1..918] |
|
|
0.0 | [4..916] | [24..961] |
|
|
0.0 | [20..916] | [70..985] |
|
|
0.0 | [20..913] | [24..971] |
|
|
0.0 | [4..913] | [45..997] |
|
|
0.0 | [4..913] | [45..997] |
|
Region A: Residues: [1-304] |
1 11 21 31 41 51
| | | | | |
1 MIKTRIEEVQ LQFLTGNTEL THLKVSNDQL IVTTQRTIYR INLQDPAIVN HFDCPLSKEL 60
61 ETIMNVHVSP MGSVILIRTN FGRYMLLKDG EFTQLNKIKN LDLSSLHWIN ETTFLMGIKK 120
121 TPKLYRVELT GKDITTKLWY ENKKLSGGID GIAYWEGSLL LTIKDNILYW RDVTNMKFPL 180
181 VLPDESEQFE RLKHHAIKKF DSYNGLFAWV TSNGIVFGDL KEKQMEKDPA SNNFGKFLSS 240
241 SKVLLNFELP DYQNDKDHLI KDIVLTAFHI LLLRKNTVTM VSQLNNDVVF HETIPRHQLT 300
301 GSNT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [305-823] |
1 11 21 31 41 51
| | | | | |
1 DSNEKFLGLV RDSVKETFWC FSNINVFEII IENEPNSVWN LLVRDNKFDK ALSLKGLTVR 60
61 EIESVKLSKA MYLFHTAKDF HSAAQTLGSM KDLSHFGEIA LNFLQIKDYN DLNVILIKQL 120
121 DNVPWKSTQV VLSSWIIWNF MKQLNDIELK INTTKPASTD EDNLLNWNLN LKEKSNELTK 180
181 FLESHLEKLD NETVYQIMSK QNRQNELLIF ASLINDMKFL LSFWIDQGNW YESLKILLTI 240
241 NNHDLVYKYS LILLLNSPEA TVSTWMKIKD LDPNKLIPTI LKFFTNWQNN SKLITNISEY 300
301 PENYSLTYLK WCVREVPKMC NPIVYNSILY MMITDPRNDM ILENDIIKFM KSNENKYDLN 360
361 FQLRLSLKFK KTKTSIFLLT RLNLFEDAID LALKNNLIDD CKVIVNDEIL IEDYKLRKRL 420
421 WLKIAKHLLL SMKDIDIKQL IRTILNDSNE ILTIKDLLPF FNEYTTIANL KEELIKFLEN 480
481 HNMKMNEISE DIINSKNLKV EINTEISKFN EIYRILEPG
|
| Detection Method: | |
| Confidence: | 21.30103 |
| Match: | 1b89A_ |
| Description: | Clathrin heavy chain proximal leg segment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [824-918] |
1 11 21 31 41 51
| | | | | |
1 KSCDECGKFL QIKKFIVFPC GHCFHWNCII RVILNSNDYN LRQKTENFLK AKSKHNLNDL 60
61 ENIIVEKCGL CSDININKID QPISIDETEL AKWNE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.437 | a.65.1 | Annexin |
| View | Download | 0.547 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.342 | a.4.3 | ARID-like |
| View | Download | 0.382 | a.118.14 | FliG |
| View | Download | 0.373 | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
| View | Download | 0.332 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.329 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.295 | a.46.1 | Methionine synthase domain |
| View | Download | 0.295 | a.4.1 | Homeodomain-like |
| View | Download | 0.277 | b.34.8 | Fumarylacetoacetate hydrolase, FAH, N-terminal domain |
| View | Download | 0.266 | a.3.1 | Cytochrome c |
| View | Download | 0.263 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.255 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.251 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.249 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.247 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.244 | a.3.1 | Cytochrome c |
| View | Download | 0.242 | a.118.8 | TPR-like |
| View | Download | 0.232 | a.77.1 | DEATH domain |
| View | Download | 0.227 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.227 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.218 | a.2.7 | tRNA-binding arm |
| View | Download | 0.213 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.210 | a.77.1 | DEATH domain |
| View | Download | 0.208 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.207 | a.3.1 | Cytochrome c |
|
Region A: Residues: [816-918] |
1 11 21 31 41 51
| | | | | |
1 IYRILEPGKS CDECGKFLQI KKFIVFPCGH CFHWNCIIRV ILNSNDYNLR QKTENFLKAK 60
61 SKHNLNDLEN IIVEKCGLCS DININKIDQP ISIDETELAK WNE
|
| Detection Method: | |
| Confidence: | 1.57 |
| Match: | 2ecnA |
| Description: | No description for 2ecnA was found. |
