YRC Public Data Repository - Protein Structure Prediction

Protein:	RRN5
Organism:	Saccharomyces cerevisiae
Length:	363 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRN5.

Description	E-value	Query Range	Subject Range
gi\|1276905 - gi\|1276905\|gb\|AAC49257.1\| Rrn5p	0.0	[1..363]	[1..363]
rrn5 - RNA polymerase I upstream activation factor complex subunit Rrn5 RRN5_SCHPO - RNA polymerase I-specific transcription initiation factor rrn5 OS=Schizosaccharomyces pombe (strain ...	0.005	[59..214]	[71..238]

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Predicted Domain #1

Region A:
Residues: [1-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHQQLRKYV ELYNKEVEEF YNGAASGRPA EFHPSKVHVK SIHEKAGTAN AGVEISSVGV  60
   61 DWDSEEKNTF FWCLSRYSIH RVDEWRSLLP RKSAMEILGY YRLLRRASAS ARSRKAGDDG 120
  121 APIAYEMSAE WVALETKLSE TVMAITEGAA EVADEEGHCE GLIDYESWKR RWVAIYSHSR 180
  181 IAEIRPLPRH ALPLSRSATQ TLERCVSRYT RTLLWCTALA GMASRSVSAR AAESRGHKSL 240
  241 PTVVTRRQVE RALCTEARSR DLHVLPRRIV LTLRKWELDY PREGKLFRTK EMAHLFLQSQ 300
  301 LSRRDAPPVH QDENQENQEN QENQEQDNTA SEGESEAERD EIDEADLFRS ALHENQLLKW 360
  361 LSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [156-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGHCEGLIDY ESWKRRWVAI YSHSRIAEIR PLPRHALPLS RSATQTLERC VSRYTRTLLW  60
   61 CTALAGMASR SVSARAAESR GHKSLPTVVT RRQVERALCT EARSRDLHVL PRRIVLTLRK 120
  121 WELDYPREGK LFRTKEMAHL FLQSQLSRRD APPVHQDENQ ENQENQENQE QDNTASEGES 180
  181 EAERDEIDEA DLFRSALHEN QLLKWLSK