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Protein Overview: rrn5

General Information:
Name(s) found: rrn5 / SPAC29A4.10 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RNA polymerase I upstream activation factor complex subunit Rrn5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 556 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed articleLink to PubMed article]
    RNA polymerase I upstream activating factor complex [TASLink to PubMed article]
    Biological Process: transcription from RNA polymerase I promoter [IDALink to PubMed article]
    regulation of transcription, DNA-dependent [RCALink to PubMed article]
    Molecular Function: RNA polymerase I transcription factor activity [IDALink to PubMed article]
    rDNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSINGLNE SEGSTPLSTA SIIGSSEQLY MTHDERYLDV LQQYEVETEN KRDFDLEEEQ  60
   61 WGVLSGSCVD GTYWSAEEKE LFFQAVARNG KRDLDLIAYS IPSKSAVQIE RYINALENEL 120
  121 RWLRNHVDAS VRSQCLLKYE DIPIAMEMSQ NWIDWEEKIA ERLLEGSNIS GVETSHYNAQ 180
  181 SVKNKTSNED LFDTNEMRKI SERFYHFDRQ APFPSNPLSA GATEFLLQII KSKLKELIGT 240
  241 SIFLAESRFR KLEANNAFHR KPIIKNRDVV LSGKFLRFHR FNIPGFWKYL PTRQKMNVYK 300
  301 RNKRLKFQNY IHIMESDERQ SKLKLGRVRA RKTKNNENTM FFDSKEHSTD ESDGNLGEHD 360
  361 VKRKVDSVPA DETSINGFKK SVNQAEYPDN AQMFMDESVA EESLVEIDDS VEAYDMIQSK 420
  421 NYESFVWKYV LHLTDEMSTE DALFETIPLS NLLAQKRMKD KLKGSDVFTT LKITSKSLHN 480
  481 IDEHSDSDDE VQPICYYYKD PVVSHAPGAA EVVSELESGY VGLISYDLSN LPNSTEDPER 540
  541 KLAKPVSSWE LSLPLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..170] MSA 2.018995 View MSA. No confident structure predictions are available.
    2 View Details [171..282] deduced N/A No confident structure predictions are available.
    3 View Details [283..353] deduced N/A No confident structure predictions are available.
    4 View Details [354..556] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle