YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR137W
Organism:	Saccharomyces cerevisiae
Length:	367 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR137W.

Description	E-value	Query Range	Subject Range
RKM5_YEAS7 - Ribosomal lysine N-methyltransferase 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RKM5 PE=3 SV=1 YLR137W - Putative S-adenosylmethionine-dependent methyltransferase RKM5_YEAS2 - Ribosomal lysine N-methyltransferase 5 OS=Saccharomyces cerevisiae (strain JAY291) GN=RKM5 PE=3 SV=1 RKM5_YEAST - Ribosomal lysine N-methyltransferase 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=R... RKM5_YEAS6 - Ribosomal lysine N-methyltransferase 5 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RKM5 PE=3 SV...	0.0	[1..367]	[1..367]
SPCC4G3.16 - CMP /dCMP deaminase family RIB2_SCHPO - Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Schizosaccharomyces pombe (strain 972 / AT...	2.0E-37	[71..207]	[37..139]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKLWLLDE ETIYEHVFER YTQLEGQSGK LAQDLGIQDR RGGVLEITFE PSGLEGGRKK  60
   61 KRVRRRNKAS SVEEDQNVAV DSYHVSVGQS ISSLRSSRDN GNSTTGYVLW STTPFFINWL 120
  121 LYSTSAAPFR LGSQVEVTCG SSCEGHKLEL PRLVDLTGAD RGKRGILELG AGISGILPVI 180
  181 LGNFVDTYVS TDQKGILNKL KDNIMENLSQ LTRKRCISRS LRLEL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [226-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTVEPVGDAD ITAASLPSKS TLHLEVAALD WEKINLQDKK THSLHPELSL IGETCSSVYV  60
   61 IAMDVIYNEY LIDPFLKTLK QLKHWLQTTY NLQFHVLVGI HLRSQEVTTL FLEKAIIEYD 120
  121 FTVYDIVDQV IQESRFNFYL IT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.816	c.50.1	Macro domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits