| Protein: | MSL5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 476 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSL5.
| Description | E-value | Query Range |
Subject Range |
|
|
372.0 | [0..8] | [391..257] |
|
|
344.0 | [0..8] | [391..266] |
|
|
326.0 | [0..50] | [475..89] |
|
|
326.0 | [0..8] | [375..1175] |
|
|
314.0 | [0..26] | [388..129] |
|
|
313.0 | [0..26] | [313..13] |
|
|
312.0 | [0..27] | [343..250] |
|
|
310.0 | [0..26] | [388..140] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MSFRRINSRY FENRKGSSME EKKAKVPPNV NLSLWRKNTV ESDVHRFNSL PSKISGALTR 60
61 EQIYSYQVMF RIQEITIKLR TNDFVPPSRK NRSPS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.562 | N/A | N/A | d.64.2 | Description not found. |
| View | Download | 0.412 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.412 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.340 | N/A | N/A | a.159.3 | Description not found. |
| View | Download | 0.298 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.298 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.242 | N/A | N/A | a.159.3 | Description not found. |
| View | Download | 0.214 | N/A | N/A | a.144.1 | PABC (PABP) domain |
|
Region A: Residues: [96-273] |
1 11 21 31 41 51
| | | | | |
1 PPPVYDAQGK RTNTREQRYR KKLEDERIKL VEIALKTIPY FVPPDDYKRP TKFQDKYYIP 60
61 VDQYPDVNFV GLLLGPRGRT LRKLQEDSNC KIAIRGRGSV KEGKNASDLP PGAMNFEDPL 120
121 HCLIIADSED KIQKGIKVCQ NIVIKAVTSP EGQNDLKRGQ LRELAELNGT LREDNRPC
|
| Detection Method: | |
| Confidence: | 335.10721 |
| Match: | 1k1gA |
| Description: | RNA splicing factor 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [274-476] |
1 11 21 31 41 51
| | | | | |
1 PICGLKDHKR YDCPNRKIPN IQGIVCKICG QTGHFSRDCN SSSQRMSRFD RNATVNNSAP 60
61 IQSNDVHYNS NTHPIQAPKR SRYDNNSTEP PLKFPASSRY APSPSPPASH ISRQAQNVTP 120
121 TPPPGLTSSS FSSGVPGIAP PPLQSPPESE QPKFSLPPPP GMTTVQSSIA PPPGLSGPPG 180
181 FSNNMGNDIN KPTPPGLQGP PGL
|
| Detection Method: | |
| Confidence: | 14.07 |
| Match: | |
| Description: | No description for 1i3qA was found. |
