YRC Public Data Repository - Protein Structure Prediction

Protein:	TRX1
Organism:	Saccharomyces cerevisiae
Length:	103 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRX1.

Description	E-value	Query Range	Subject Range
gi\|151941211 - gi\|151941211\|gb\|EDN59589.1\| thioredoxin reductase [Saccharomyces cerevisiae YJM789] TRX1_YEAST - Thioredoxin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRX1 PE=1 SV=3 TRX1 - Cytoplasmic thioredoxin isoenzyme of the thioredoxin system which protects cells against oxidative a... ORFP:14676 - YLR043C, Contig c49 5637-5948 gi\|190406082 - gi\|190406082\|gb\|EDV09349.1\| thioredoxin I [Saccharomyces cerevisiae RM11-1a]	1.0E-33	[1..103]	[1..103]
gi\|56752273, gi\|... - gi\|56752273\|ref\|YP_172974.1\| thioredoxin [Synechococcus elongatus PCC 6301], gi\|56687232\|dbj\|BAD8045... gi\|79689 - gi\|79689\|pir\|\|A32956 thioredoxin m - Synechococcus sp THIO1_SYNE7 - Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2	2.0E-32	[5..102]	[7..106]
TRXM_PEA - Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1	4.0E-32	[3..102]	[69..171]
gi\|25282775 - pir\|\|AD1813 thioredoxin [imported] - Nostoc sp. (strain PCC 7120) gi\|75702591, gi\|... - gi\|75908866\|ref\|YP_323162.1\| thioredoxin [Anabaena variabilis ATCC 29413], gi\|75702591\|gb\|ABA22267.1... gi\|7427614, gi\|1... - gi\|7427614\|pir\|\|TXAI thioredoxin 1 - Anabaena sp, gi\|142118\|gb\|AAA22049.1\| thioredoxin THIO1_NOSSO - Thioredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) GN=trxA PE=1 SV=2 THIO1_NOSS1 - Thioredoxin-1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trxA PE=3 SV=2	5.0E-32	[4..102]	[6..106]
THIO_HORSE - Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3	8.0E-32	[1..100]	[1..102]
THIO_CYACA - Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1	8.0E-32	[3..102]	[5..106]
gi\|157830999, gi... - gi\|1827675\|pdb\|1ERV\| Chain , Human Thioredoxin Mutant With Cys 73 Replaced By Ser (Reduced Form), ...	9.0E-32	[1..101]	[1..103]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	9.0E-32	[4..102]	[2..100]
THIO_SYNY3 - Thioredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trxA PE=1 SV=3 gi\|628912 - pir\|\|S46958 thioredoxin A - Synechocystis sp. (strain PCC 6803) THIO_SYNY3 - Thioredoxin OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=trxA PE=1 SV=3	1.0E-31	[4..102]	[6..106]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTQFKTASE FDSAIAQDKL VVVDFYATWC GPCKMIAPMI EKFSEQYPQA DFYKLDVDEL  60
   61 GDVAQKNEVS AMPTLLLFKN GKEVAKVVGA NPAAIKQAIA ANA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	226.67837
Match:	1erv__
Description:	Thioredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits