YRC Public Data Repository - Protein Structure Prediction

Protein:	PAM18
Organism:	Saccharomyces cerevisiae
Length:	168 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAM18.

Description	E-value	Query Range	Subject Range
PAM18 - Constituent of the import motor (PAM complex) component of the Translocase of the Inner Mitochondria... gi\|151941176 - gi\|151941176\|gb\|EDN59554.1\| co-chaperone [Saccharomyces cerevisiae YJM789] TIM14_YEAST - Mitochondrial import inner membrane translocase subunit TIM14 OS=Saccharomyces cerevisiae (strain AT... gi\|190406049 - gi\|190406049\|gb\|EDV09316.1\| mitochondrial import inner membrane translocase subunit TIM14 [Saccharom... gi\|207343210 - gi\|207343210\|gb\|EDZ70742.1\| YLR008Cp-like protein [Saccharomyces cerevisiae AWRI1631]	1.0E-48	[1..167]	[1..164]
SPBC543.02c - DNAJ /TPR domain protein DNAJC7 family DNJC7_SCHPO - DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	6.0E-31	[19..168]	[254..408]
DNJ36_ARATH - DnaJ protein P58IPK homolog OS=Arabidopsis thaliana GN=P58IPK PE=1 SV=1	4.0E-30	[19..167]	[276..429]
gi\|12847473 - gi\|12847473\|dbj\|BAB27584.1\| unnamed protein product [Mus musculus]	2.0E-29	[19..167]	[94..251]
gi\|21707455, gi\|... - gi\|4507713\|ref\|NP_003306.1\| DnaJ (Hsp40) homolog, subfamily C, member 7 [Homo sapiens], gi\|21707455\|... gi\|60814211, gi\|... - gi\|61355290\|gb\|AAX41124.1\| DnaJ-like subfamily C member 7 [synthetic construct], gi\|60814211\|gb\|AAX3...	1.0E-28	[19..167]	[277..434]
FBpp0305671, Tpr2-PA - The gene Tetratricopeptide repeat protein 2 is referred to in FlyBase by the symbol Dmel\Tpr2 (CG459...	4.0E-26	[21..167]	[310..465]
DNJ2_AQUAE, DNAJ... - (O66921) Chaperone protein dnaJ-2, Chaperone protein DnaJ 2 OS=Aquifex aeolicus GN=dnaJ2 PE=3 SV=1 DNAJ2_AQUAE - Chaperone protein DnaJ 2 OS=Aquifex aeolicus (strain VF5) GN=dnaJ2 PE=3 SV=1	3.0E-24	[108..168]	[4..66]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQSNTGNS IEAPQLPIPG QTNGSANVTV DGAGVNVGIQ NGSQGQKTGM DLYFDQALNY  60
   61 MGEHPVITGF GAFLTLYFTA GAYKSISKGL NG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKSTTAFLKG GFDPKMNSKE ALQILNLTEN TLTKKKLKEV HRKIMLANHP DKGGSPFLAT  60
   61 KINEAKDFLE KRGISK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1hdj__
Description:	HSP40
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits