| Protein: | PAM18 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 168 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAM18.
| Description | E-value | Query Range |
Subject Range |
|
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1.0E-48 | [1..167] | [1..164] |
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6.0E-31 | [19..168] | [254..408] |
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4.0E-30 | [19..167] | [276..429] |
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2.0E-29 | [19..167] | [94..251] |
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1.0E-28 | [19..167] | [277..434] |
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4.0E-26 | [21..167] | [310..465] |
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3.0E-24 | [108..168] | [4..66] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MSSQSNTGNS IEAPQLPIPG QTNGSANVTV DGAGVNVGIQ NGSQGQKTGM DLYFDQALNY 60
61 MGEHPVITGF GAFLTLYFTA GAYKSISKGL NG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.513 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.684 | a.39.1 | EF-hand |
| View | Download | 0.684 | a.39.1 | EF-hand |
| View | Download | 0.673 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.476 | a.28.1 | ACP-like |
| View | Download | 0.567 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.565 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.673 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.567 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.565 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.469 | b.36.1 | PDZ domain-like |
| View | Download | 0.459 | b.4.1 | HSP40/DnaJ peptide-binding domain |
| View | Download | 0.450 | b.36.1 | PDZ domain-like |
| View | Download | 0.440 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.424 | d.95.2 | Homing endonucleases |
| View | Download | 0.414 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.410 | a.64.1 | Saposin |
| View | Download | 0.410 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.409 | a.118.8 | TPR-like |
| View | Download | 0.404 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.391 | a.64.1 | Saposin |
| View | Download | 0.390 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.385 | a.77.1 | DEATH domain |
| View | Download | 0.377 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.377 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.367 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.364 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.361 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.360 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.358 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.354 | d.4.1 | His-Me finger endonucleases |
| View | Download | 0.346 | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.346 | a.77.1 | DEATH domain |
| View | Download | 0.343 | a.3.1 | Cytochrome c |
| View | Download | 0.334 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.325 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.325 | a.112.1 | Description not found. |
| View | Download | 0.324 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.315 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.305 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.299 | a.29.2 | Bromodomain |
| View | Download | 0.296 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.294 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.291 | a.74.1 | Cyclin-like |
| View | Download | 0.285 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.284 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.276 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.276 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.266 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.265 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.255 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.254 | a.118.1 | ARM repeat |
| View | Download | 0.253 | a.17.1 | p8-MTCP1 |
| View | Download | 0.252 | a.2.3 | Chaperone J-domain |
| View | Download | 0.251 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.248 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.248 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.247 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.244 | a.26.1 | 4-helical cytokines |
| View | Download | 0.240 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.237 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.235 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.231 | a.118.1 | ARM repeat |
| View | Download | 0.227 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.218 | a.118.8 | TPR-like |
| View | Download | 0.218 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.215 | a.7.8 | GAT domain |
| View | Download | 0.213 | a.1.1 | Globin-like |
| View | Download | 0.210 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.203 | a.51.1 | Cytochrome c oxidase subunit h |
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Region A: Residues: [93-168] |
1 11 21 31 41 51
| | | | | |
1 GKSTTAFLKG GFDPKMNSKE ALQILNLTEN TLTKKKLKEV HRKIMLANHP DKGGSPFLAT 60
61 KINEAKDFLE KRGISK
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| Detection Method: | |
| Confidence: | 18.522879 |
| Match: | 1hdj__ |
| Description: | HSP40 |
Matching Structure (courtesy of the PDB): |
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