Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLL054C.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..769] | [1..769] |
|
|
0.0 | [4..673] | [28..641] |
|
|
0.0 | [4..673] | [28..641] |
|
|
7.0E-80 | [7..621] | [32..603] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MSIASQKKVK PSFVCLRCKQ RKIKCDKLWP TCSKCKASSS ICSYEVEPGR INKSPTIENA 60
61 PHRDIRNITP ASMSASGSFT SILNPSTKDW EMKNFAMNLS NAHDKLVVMN NTTIVDSPFA 120
121 FHSILQHDLY AKALTTCIHE RILIDVERHR
|
| Detection Method: |  |
| Confidence: | 14.522879 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.16002381293778 | bayes_pls_golite062009 |
| DNA binding | 3.92936270801133 | bayes_pls_golite062009 |
| nucleic acid binding | 3.76909067702445 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| transcription factor activity | 2.76608547022152 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.80020012839068 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.69026374220371 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.54700248976411 | bayes_pls_golite062009 |
| transcription activator activity | 0.778623988601299 | bayes_pls_golite062009 |
|
Region A: Residues: [151-210] |
1 11 21 31 41 51
| | | | | |
1 ENVSANNKKR ELNLTIGDIG PLFFIDKAAL KFIENTSKTS KLYPPIDFLY NTYDYEQAHP 60
61
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [211-230] |
1 11 21 31 41 51
| | | | | |
1 EENNDKISIN ILLEELSKYF
|
|
Region B: Residues: [244-254] |
1 11 21 31 41 51
| | | | | |
1 YKTIYPVYPL L
|
|
Region C: Residues: [388-415] |
1 11 21 31 41 51
| | | | | |
1 NEEPFQYTRY VSESDDYPRL FNLRRKLW
|
| Detection Method: | |
| Confidence: | 8.29 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [231-243] |
1 11 21 31 41 51
| | | | | |
1 LNKNEVDGLI VDF
|
|
Region B: Residues: [255-387] |
1 11 21 31 41 51
| | | | | |
1 EISLFEDNIR ELLQLNEFNG YNIVFAGKDS RRKLETITLL TIILAFSYRR LSLSTSHSFK 60
61 ESFGVKSNNL TLLAHKLLAL MNVFQYVNEH TLCCLLYFFI LRYLNPDQAD MYPTHSDILN 120
121 LKFLENVAIK LGL
|
|
Region C: Residues: [416-705] |
1 11 21 31 41 51
| | | | | |
1 LGVQFLKFGI LIPEGDSDIL SLEYLRSFMK TDESLPELFE RNYASTNNLD LSLMATAENI 60
61 YHLHLSLQVL LTSCFPINGP SYLKEVLDNI DKTKDFLNQK FPLILSSLGE PRMKSLHINV 120
121 PSSLANEESF DFSTFEENET FIANVISYTC TMNIYDSLSL HFENQCFKNA LEYKTYYHRF 180
181 TFTAIQDYLT LLKLISEYFN GSLLHLREPF GFATQKVVRF SIHRLLIFQA TLLVRLFYKK 240
241 DTCDRSSAAM GMLNDRNGRL SRVIEKMIKL MSYHMKLLVE IVISKLEKSY
|
| Detection Method: | |
| Confidence: | 8.29 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [706-769] |
1 11 21 31 41 51
| | | | | |
1 LGSFISVSIF RYIIYLVDTD ALSAFISDYW KSDAVMDERY SRIHRIVGLK WGMGRDKSFS 60
61 FTQN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.745 | 0.802 | transcription activator activity | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [673-769] |
1 11 21 31 41 51
| | | | | |
1 GRLSRVIEKM IKLMSYHMKL LVEIVISKLE KSYLGSFISV SIFRYIIYLV DTDALSAFIS 60
61 DYWKSDAVMD ERYSRIHRIV GLKWGMGRDK SFSFTQN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
