| Protein: | PUF3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 879 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUF3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..879] | [1..879] |
|
|
0.0 | [85..875] | [184..954] |
|
|
0.0 | [514..875] | [2..345] |
|
|
0.0 | [79..879] | [23..847] |
|
|
0.0 | [44..875] | [88..838] |
|
|
0.0 | [49..852] | [156..966] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MEMNMDMDMD MELASIVSSL SALSHSNNNG GQAAAAGIVN GGAAGSQQIG GFRRSSFTTA 60
61 NEVDSEILLL HGSSESSPIF KKTALSVGTA PPFSTNSKKF FGNGGNYYQY RSTDTASLSS 120
121 ASYNNYHTHH TAANLGKNNK VNHLLGQ
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.383 | 0.191 | mRNA binding | a.1.1 | Globin-like |
| View | Download | 0.355 | 0.025 | mRNA binding | a.74.1 | Cyclin-like |
| View | Download | 0.275 | 0.019 | mRNA binding | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
| View | Download | 0.239 | 0.007 | mRNA binding | f.1.1 | Colicin |
| View | Download | 0.383 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.355 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.275 | N/A | N/A | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
| View | Download | 0.250 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.250 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.239 | N/A | N/A | f.1.1 | Colicin |
|
Region A: Residues: [148-513] |
1 11 21 31 41 51
| | | | | |
1 YSASIAGPVY YNGNDNNNSG GEGFFEKFGK SLIDGTRELE SQDRPDAVNT QSQFISKSVS 60
61 NASLDTQNTF EQNVESDKNF NKLNRNTTNS GSLYHSSSNS GSSASLESEN AHYPKRNIWN 120
121 VANTPVFRPS NNPAAVGATN VALPNQQDGP ANNNFPPYMN GFPPNQFHQG PHYQNFPNYL 180
181 IGSPSNFISQ MISVQIPANE DTEDSNGKKK KKANRPSSVS SPSSPPNNSP FPFAYPNPMM 240
241 FMPPPPLSAP QQQQQQQQQQ QQEDQQQQQQ QENPYIYYPT PNPIPVKMPK DEKTFKKRNN 300
301 KNHPANNSNN ANKQANPYLE NSIPTKNTSK KNASSKSNES TANNHKSHSH SHPHSQSLQQ 360
361 QQQTYH
|
| Detection Method: | |
| Confidence: | 14.59 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [514-647] |
1 11 21 31 41 51
| | | | | |
1 RSPLLEQLRN SSSDKNSNSN MSLKDIFGHS LEFCKDQHGS RFIQRELATS PASEKEVIFN 60
61 EIRDDAIELS NDVFGNYVIQ KFFEFGSKIQ KNTLVDQFKG NMKQLSLQMY ACRVIQKALE 120
121 YIDSNQRIEL VLEL
|
| Detection Method: | |
| Confidence: | 973.9794 |
| Match: | 1ib2A_ |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein transporter activity | 3.78867875686001 | bayes_pls_golite062009 |
| binding | 2.48958374349477 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 2.31781486383479 | bayes_pls_golite062009 |
| RNA binding | 2.11573661150436 | bayes_pls_golite062009 |
| transporter activity | 2.07943941884833 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.94695201254013 | bayes_pls_golite062009 |
| protein binding | 1.94427330399472 | bayes_pls_golite062009 |
| nucleic acid binding | 1.25530318108311 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.912298340413274 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.798034501840742 | bayes_pls_golite062009 |
| mRNA binding | 0.73831124805124 | bayes_pls_golite062009 |
| transcription regulator activity | 0.464230801825493 | bayes_pls_golite062009 |
| DNA binding | 0.356030945125909 | bayes_pls_golite062009 |
| hydrolase activity | 0.251693850515235 | bayes_pls_golite062009 |
| hydrogen ion transmembrane transporter activity | 0.184228011150913 | bayes_pls_golite062009 |
| signal sequence binding | 0.14931345687137 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 0.144906281351729 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 0.128082902706083 | bayes_pls_golite062009 |
|
Region A: Residues: [648-746] |
1 11 21 31 41 51
| | | | | |
1 SDSVLQMIKD QNGNHVIQKA IETIPIEKLP FILSSLTGHI YHLSTHSYGC RVIQRLLEFG 60
61 SSEDQESILN ELKDFIPYLI QDQYGNYVIQ YVLQQDQFT
|
| Detection Method: | |
| Confidence: | 973.9794 |
| Match: | 1ib2A_ |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [747-879] |
1 11 21 31 41 51
| | | | | |
1 NKEMVDIKQE IIETVANNVV EYSKHKFASN VVEKSILYGS KNQKDLIISK ILPRDKNHAL 60
61 NLEDDSPMIL MIKDQFANYV IQKLVNVSEG EGKKLIVIAI RAYLDKLNKS NSLGNRHLAS 120
121 VEKLAALVEN AEV
|
| Detection Method: | |
| Confidence: | 973.9794 |
| Match: | 1ib2A_ |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
